Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

10537381 .. 10548667

Gene Structure 11287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG123700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCTTACCAAGGAAGAGAAACTCAACTCACCAATGCTTACTCTTCGTAAGCTCGCCTCCATCTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCCCAGCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCCGTCAAGCAGTGGTCGGAGGCCCCCGGAAAGCTCTCTCCGGTGGCCGCCACCAACCTCCCTGAGAAGGGCAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCTGCCGCAAGCTCGTCGAGTCCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTCGGGATATTTGCATTACACGACGGTGCAATTGGGGGCGCCAGGAATGAAGTTTATGGTAGCGCTTGATACCGGGAGTGACCTGCTTTGGGTGTATCTTCTTGTCCGACTTCGATTGGTCTTCCGGAAATTGAACACGGGCTCATCGATTCGTATCGCGACAAGTGGTACTCCTCTCGACTCGGTACTGTGCGCGAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTCTTCTTACTCTGATGCAGATAAAGATTTTGCTCGGGGAAATTGTTATAACCCAGAAGTTATTAGCACTACAAAATTCAGGGATGCAGTTGCAAATGACGTCTTAATGGTATCATCTTGCTCTTTTTCCTTCTTCTCCATGTTTCTTATGTGCATGGTTAATCAGACTCGGGCTAATTTAATGGTTCTCATGAATTTGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

8.86

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AasI	GACNNNNNNGTC	1 cut(s)	119
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	385
AccII	CGCG	4 cut(s)	120, 261, 506, 542
AccIII	TCCGGA	1 cut(s)	471
AciI	CCGC	7 cut(s)	118, 145, 204, 259, 265, 274, 280
AcoI	YGGCCR	2 cut(s)	115, 201
AcsI	RAATTY	2 cut(s)	650, 769
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	386, 675
AfaI	GTAC	3 cut(s)	239, 517, 534
AfeI	AGCGCT	1 cut(s)	411
AfiI	CCNNNNNNNGG	3 cut(s)	223, 224, 436
AgsI	TTSAA	3 cut(s)	481, 550, 775
AjnI	CCWGG	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	7 cut(s)	52, 108, 129, 190, 231, 286, 555
AluI	AGCT	7 cut(s)	52, 108, 129, 190, 231, 286, 555
Ama87I	CYCGRG	2 cut(s)	609, 744
Aor13HI	TCCGGA	1 cut(s)	471
Aor51HI	AGCGCT	1 cut(s)	411
AoxI	GGCC	3 cut(s)	115, 177, 201
ApeKI	GCWGC	3 cut(s)	108, 228, 276
ApoI	RAATTY	2 cut(s)	650, 769
AspLEI	GCGC	3 cut(s)	388, 412, 542
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	183, 421
AsuHPI	GGTGA	2 cut(s)	21, 334
AvaI	CYCGRG	2 cut(s)	609, 744
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	491
BbsI	GAAGAC	2 cut(s)	115, 460
BbvI	GCAGC	3 cut(s)	95, 240, 263
BccI	CCATC	2 cut(s)	68, 85
BceAI	ACGGC	2 cut(s)	130, 337
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	390
BcnI	CCSGG	2 cut(s)	183, 421
BfoI	RGCGCY	2 cut(s)	389, 413
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	6 cut(s)	109, 118, 204, 229, 277, 280
BlsI	GCNGC	6 cut(s)	110, 119, 205, 230, 278, 281
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	3 cut(s)	183, 390, 421
BmeT110I	CYCGRG	2 cut(s)	609, 744
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 387
BmrFI	CCNGG	3 cut(s)	183, 390, 421
BmsI	GCATC	3 cut(s)	126, 580, 649
BpiI	GAAGAC	2 cut(s)	115, 460
BpuMI	CCSGG	2 cut(s)	183, 421
Bsa29I	ATCGAT	1 cut(s)	494
BsaBI	GATNNNNATC	1 cut(s)	500
BsaHI	GRCGYC	2 cut(s)	386, 675
BsaJI	CCNNGG	3 cut(s)	9, 181, 561
BsaWI	WCCGGW	2 cut(s)	196, 471
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 311, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 224, 436
Bse8I	GATNNNNATC	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	390
BseCI	ATCGAT	1 cut(s)	494
BseDI	CCNNGG	3 cut(s)	9, 181, 561
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	3 cut(s)	223, 224, 436
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	260, 510
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	95, 240, 263
BseYI	CCCAGC	1 cut(s)	104
Bsh1236I	CGCG	4 cut(s)	120, 261, 506, 542
Bsh1285I	CGRYCG	2 cut(s)	118, 265
BshFI	GGCC	3 cut(s)	117, 179, 203
BshNI	GGYRCC	1 cut(s)	385
BshVI	ATCGAT	1 cut(s)	494
BsiEI	CGRYCG	2 cut(s)	118, 265
BsiHKCI	CYCGRG	2 cut(s)	609, 744
BsiSI	CCGG	4 cut(s)	183, 197, 420, 472
BslI	CCNNNNNNNGG	3 cut(s)	223, 224, 436
BsnI	GGCC	3 cut(s)	117, 179, 203
BsoBI	CYCGRG	2 cut(s)	609, 744
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	471
Bsp143I	GATC	1 cut(s)	339
Bsp19I	CCATGG	1 cut(s)	561
Bsp68I	TCGCGA	1 cut(s)	506
BspACI	CCGC	7 cut(s)	118, 145, 204, 259, 265, 274, 280
BspANI	GGCC	3 cut(s)	117, 179, 203
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	494
BspEI	TCCGGA	1 cut(s)	471
BspFNI	CGCG	4 cut(s)	120, 261, 506, 542
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	180, 387
BspMI	ACCTGC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	9, 181, 561
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	2 cut(s)	386, 675
BssT1I	CCWWGG	2 cut(s)	9, 561
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	2 cut(s)	373, 537
Bst6I	CTCTTC	3 cut(s)	9, 48, 352
BstACI	GRCGYC	2 cut(s)	386, 675
BstC8I	GCNNGC	2 cut(s)	54, 284
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	664
BstFNI	CGCG	4 cut(s)	120, 261, 506, 542
BstH2I	RGCGCY	2 cut(s)	389, 413
BstHHI	GCGC	3 cut(s)	388, 412, 542
BstKTI	GATC	1 cut(s)	342
BstMBI	GATC	1 cut(s)	339
BstMCI	CGRYCG	2 cut(s)	118, 265
BstMWI	GCNNNNNNNGC	5 cut(s)	114, 117, 126, 251, 273
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	3 cut(s)	181, 388, 419
BstUI	CGCG	4 cut(s)	120, 261, 506, 542
BstV1I	GCAGC	3 cut(s)	95, 240, 263
BstV2I	GAAGAC	2 cut(s)	115, 460
BstZI	CGGCCG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	117, 179, 203
BsuTUI	ATCGAT	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
BtuMI	TCGCGA	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	54, 284
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	3 cut(s)	388, 412, 542
Cfr13I	GGNCC	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	494
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	238, 516, 533
CviAII	CATG	4 cut(s)	562, 715, 730, 766
CviQI	GTAC	3 cut(s)	238, 516, 533
DdeI	CTNAG	1 cut(s)	219
DinI	GGCGCC	1 cut(s)	387
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	2 cut(s)	115, 201
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	3 cut(s)	9, 48, 352
EarI	CTCTTC	3 cut(s)	9, 48, 352
EclXI	CGGCCG	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	9, 561
Eco24I	GRGCYC	1 cut(s)	491
Eco47III	AGCGCT	1 cut(s)	411
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	109
Eco88I	CYCGRG	2 cut(s)	609, 744
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	9, 561
EcoT38I	GRGCYC	1 cut(s)	491
EgeI	GGCGCC	1 cut(s)	387
EheI	GGCGCC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	9, 561
FaeI	CATG	4 cut(s)	565, 718, 733, 769
FaiI	YATR	7 cut(s)	404, 563, 624, 716, 725, 731, 767
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	4 cut(s)	561, 714, 729, 765
Fnu4HI	GCNGC	6 cut(s)	109, 118, 204, 229, 277, 280
FokI	GGATG	1 cut(s)	671
FriOI	GRGCYC	1 cut(s)	491
Fsp4HI	GCNGC	6 cut(s)	109, 118, 204, 229, 277, 280
GlaI	GCGC	3 cut(s)	387, 411, 541
GluI	GCNGC	6 cut(s)	109, 118, 204, 229, 277, 280
GsaI	CCCAGC	1 cut(s)	108
HaeII	RGCGCY	2 cut(s)	389, 413
HaeIII	GGCC	3 cut(s)	117, 179, 203
HapII	CCGG	4 cut(s)	183, 197, 420, 472
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	3 cut(s)	388, 412, 542
Hin1I	GRCGYC	2 cut(s)	386, 675
Hin1II	CATG	4 cut(s)	565, 718, 733, 769
Hin6I	GCGC	3 cut(s)	386, 410, 540
HinP1I	GCGC	3 cut(s)	386, 410, 540
HindIII	AAGCTT	1 cut(s)	553
HinfI	GANTC	5 cut(s)	293, 496, 527, 575, 742
HpaII	CCGG	4 cut(s)	183, 197, 420, 472
HphI	GGTGA	2 cut(s)	21, 334
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	8 cut(s)	154, 175, 319, 339, 455, 574, 589, 741
Hpy188III	TCNNGA	7 cut(s)	88, 133, 351, 472, 505, 524, 766
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	4 cut(s)	116, 293, 323, 373
HpyAV	CCTTC	3 cut(s)	104, 217, 715
HpyCH4III	ACNGT	2 cut(s)	373, 537
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	7 cut(s)	139, 361, 376, 593, 662, 668, 729
HpyF10VI	GCNNNNNNNGC	5 cut(s)	114, 117, 126, 251, 273
HpyF3I	CTNAG	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	2 cut(s)	386, 675
Hsp92II	CATG	4 cut(s)	565, 718, 733, 769
HspAI	GCGC	3 cut(s)	386, 410, 540
KasI	GGCGCC	1 cut(s)	385
Kpn2I	TCCGGA	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	339
Lsp1109I	GCAGC	3 cut(s)	95, 240, 263
LweI	GCATC	3 cut(s)	126, 580, 649
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MfeI	CAATTG	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	7 cut(s)	377, 476, 545, 616, 650, 751, 769
Mly113I	GGCGCC	1 cut(s)	386
MlyI	GAGTC	3 cut(s)	302, 521, 736
MmeI	TCCRAC	4 cut(s)	153, 177, 342, 478
MnlI	CCTC	9 cut(s)	67, 77, 169, 224, 278, 281, 317, 355, 531
MroI	TCCGGA	1 cut(s)	471
MseI	TTAA	3 cut(s)	680, 735, 755
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	108, 276
MspI	CCGG	4 cut(s)	183, 197, 420, 472
MspR9I	CCNGG	3 cut(s)	183, 390, 421
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	4 cut(s)	120, 261, 506, 542
MwoI	GCNNNNNNNGC	5 cut(s)	114, 117, 126, 251, 273
NarI	GGCGCC	1 cut(s)	386
NciI	CCSGG	2 cut(s)	183, 421
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	4 cut(s)	565, 718, 733, 769
NlaIV	GGNNCC	2 cut(s)	180, 387
NmuCI	GTSAC	1 cut(s)	425
NruI	TCGCGA	1 cut(s)	506
OliI	CACNNNNGTG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	4 cut(s)	258, 297, 315, 491
PfeI	GAWTC	2 cut(s)	496, 575
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	6 cut(s)	110, 119, 205, 230, 278, 281
PleI	GAGTC	3 cut(s)	301, 521, 736
PluTI	GGCGCC	1 cut(s)	389
PpsI	GAGTC	3 cut(s)	301, 521, 736
PsiI	TTATAA	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	180, 387
PspPI	GGNCC	1 cut(s)	178
PsyI	GACNNNGTC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	108
RruI	TCGCGA	1 cut(s)	506
RsaI	GTAC	3 cut(s)	239, 517, 534
RsaNI	GTAC	3 cut(s)	238, 516, 533
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	680, 735, 755
SatI	GCNGC	6 cut(s)	109, 118, 204, 229, 277, 280
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	3 cut(s)	302, 521, 736
ScrFI	CCNGG	3 cut(s)	183, 390, 421
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	3 cut(s)	126, 580, 649
SfoI	GGCGCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	371
Sse9I	AATT	7 cut(s)	377, 476, 545, 616, 650, 751, 769
SsiI	CCGC	7 cut(s)	118, 145, 204, 259, 265, 274, 280
SspDI	GGCGCC	1 cut(s)	385
SspI	AATATT	1 cut(s)	779
StyD4I	CCNGG	3 cut(s)	181, 388, 419
StyI	CCWWGG	2 cut(s)	9, 561
TaaI	ACNGT	2 cut(s)	373, 537
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	6 cut(s)	132, 234, 291, 460, 494, 525
TasI	AATT	7 cut(s)	377, 476, 545, 616, 650, 751, 769
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	3 cut(s)	120, 206, 282
TfiI	GAWTC	2 cut(s)	496, 575
Tru1I	TTAA	3 cut(s)	680, 735, 755
Tru9I	TTAA	3 cut(s)	680, 735, 755
TscAI	CASTG	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	3 cut(s)	108, 228, 276
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	410, 782
TspRI	CASTG	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	650, 769
ZraI	GACGTC	1 cut(s)	676
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.