RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1065100.v1.1 |
| pyrus_communis | pycom04g07360 |
| rosa_chinensis | RchiOBHm_Chr2g0151271 |
| rosa_laevigata | RLG00000029209 RLG00000029405 |
| rosa_multiflora | Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880 |
| rosa_rugosa | Rorug01G0017700 Rorug05G0318400 Rorug07G0300800 |
| rosa_samantha | Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300 |
| rosa_wichuraiana | Rw5G015030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 542 |
| AccII | CGCG | 1 cut(s) | 87 |
| AciI | CCGC | 2 cut(s) | 82, 528 |
| AclWI | GGATC | 1 cut(s) | 287 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AcuI | CTGAAG | 1 cut(s) | 540 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 419 |
| AgsI | TTSAA | 4 cut(s) | 46, 68, 152, 445 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 87, 119, 333, 365 |
| AluBI | AGCT | 3 cut(s) | 42, 74, 255 |
| AluI | AGCT | 3 cut(s) | 42, 74, 255 |
| AlwI | GGATC | 1 cut(s) | 287 |
| Ama87I | CYCGRG | 1 cut(s) | 141 |
| AoxI | GGCC | 1 cut(s) | 410 |
| ApeKI | GCWGC | 1 cut(s) | 486 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| AspLEI | GCGC | 1 cut(s) | 87 |
| AspS9I | GGNCC | 2 cut(s) | 25, 410 |
| AsuC2I | CCSGG | 2 cut(s) | 297, 460 |
| AsuHPI | GGTGA | 1 cut(s) | 367 |
| AvaI | CYCGRG | 1 cut(s) | 141 |
| AvaII | GGWCC | 1 cut(s) | 25 |
| BbvI | GCAGC | 1 cut(s) | 498 |
| BccI | CCATC | 4 cut(s) | 213, 376, 485, 501 |
| BcnI | CCSGG | 2 cut(s) | 297, 460 |
| BfaI | CTAG | 2 cut(s) | 107, 480 |
| BfuAI | ACCTGC | 1 cut(s) | 542 |
| BisI | GCNGC | 3 cut(s) | 83, 487, 528 |
| BlsI | GCNGC | 3 cut(s) | 84, 488, 529 |
| Bme1390I | CCNGG | 2 cut(s) | 297, 460 |
| Bme18I | GGWCC | 1 cut(s) | 25 |
| BmeT110I | CYCGRG | 1 cut(s) | 141 |
| BmgT120I | GGNCC | 2 cut(s) | 25, 410 |
| BmiI | GGNNCC | 1 cut(s) | 26 |
| BmrFI | CCNGG | 2 cut(s) | 297, 460 |
| BmsI | GCATC | 2 cut(s) | 458, 514 |
| BpuEI | CTTGAG | 1 cut(s) | 386 |
| BpuMI | CCSGG | 2 cut(s) | 297, 460 |
| BsaJI | CCNNGG | 1 cut(s) | 140 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 419 |
| BseDI | CCNNGG | 1 cut(s) | 140 |
| BseGI | GGATG | 2 cut(s) | 265, 310 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 419 |
| BseMII | CTCAG | 1 cut(s) | 66 |
| BseXI | GCAGC | 1 cut(s) | 498 |
| Bsh1236I | CGCG | 1 cut(s) | 87 |
| BshFI | GGCC | 1 cut(s) | 412 |
| BsiHKCI | CYCGRG | 1 cut(s) | 141 |
| BsiSI | CCGG | 2 cut(s) | 297, 459 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 419 |
| BsnI | GGCC | 1 cut(s) | 412 |
| BsoBI | CYCGRG | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 292 |
| BspACI | CCGC | 2 cut(s) | 82, 528 |
| BspANI | GGCC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspFNI | CGCG | 1 cut(s) | 87 |
| BspLI | GGNNCC | 1 cut(s) | 26 |
| BspMI | ACCTGC | 1 cut(s) | 542 |
| BspPI | GGATC | 1 cut(s) | 287 |
| BssECI | CCNNGG | 1 cut(s) | 140 |
| BssMI | GATC | 1 cut(s) | 292 |
| BstDEI | CTNAG | 1 cut(s) | 75 |
| BstF5I | GGATG | 2 cut(s) | 265, 310 |
| BstFNI | CGCG | 1 cut(s) | 87 |
| BstHHI | GCGC | 1 cut(s) | 87 |
| BstKTI | GATC | 1 cut(s) | 295 |
| BstMBI | GATC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 524 |
| BstSCI | CCNGG | 2 cut(s) | 295, 458 |
| BstUI | CGCG | 1 cut(s) | 87 |
| BstV1I | GCAGC | 1 cut(s) | 498 |
| BsuRI | GGCC | 1 cut(s) | 412 |
| BtgZI | GCGATG | 1 cut(s) | 504 |
| BtsCI | GGATG | 2 cut(s) | 265, 310 |
| BveI | ACCTGC | 1 cut(s) | 542 |
| CfoI | GCGC | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 2 cut(s) | 25, 410 |
| CseI | GACGC | 1 cut(s) | 444 |
| CviJI | RGCY | 8 cut(s) | 42, 74, 255, 269, 373, 412, 512, 518 |
| CviKI_1 | RGCY | 8 cut(s) | 42, 74, 255, 269, 373, 412, 512, 518 |
| DdeI | CTNAG | 1 cut(s) | 75 |
| DpnI | GATC | 1 cut(s) | 294 |
| DpnII | GATC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 25 |
| Eco57I | CTGAAG | 1 cut(s) | 540 |
| Eco88I | CYCGRG | 1 cut(s) | 141 |
| FaiI | YATR | 7 cut(s) | 177, 216, 347, 401, 419, 425, 515 |
| Fnu4HI | GCNGC | 3 cut(s) | 83, 487, 528 |
| FokI | GGATG | 2 cut(s) | 272, 317 |
| Fsp4HI | GCNGC | 3 cut(s) | 83, 487, 528 |
| FspBI | CTAG | 2 cut(s) | 107, 480 |
| GlaI | GCGC | 1 cut(s) | 86 |
| GluI | GCNGC | 3 cut(s) | 83, 487, 528 |
| HaeIII | GGCC | 1 cut(s) | 412 |
| HapII | CCGG | 2 cut(s) | 297, 459 |
| HgaI | GACGC | 1 cut(s) | 444 |
| HhaI | GCGC | 1 cut(s) | 87 |
| Hin6I | GCGC | 1 cut(s) | 85 |
| HinP1I | GCGC | 1 cut(s) | 85 |
| HinfI | GANTC | 4 cut(s) | 49, 219, 342, 358 |
| HpaII | CCGG | 2 cut(s) | 297, 459 |
| HphI | GGTGA | 1 cut(s) | 367 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 233, 466 |
| Hpy188III | TCNNGA | 3 cut(s) | 6, 290, 365 |
| HpyAV | CCTTC | 1 cut(s) | 439 |
| HpyCH4V | TGCA | 2 cut(s) | 335, 392 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 524 |
| HpyF3I | CTNAG | 1 cut(s) | 75 |
| HspAI | GCGC | 1 cut(s) | 85 |
| Kzo9I | GATC | 1 cut(s) | 292 |
| LmnI | GCTCC | 1 cut(s) | 483 |
| LpnPI | CCDG | 4 cut(s) | 310, 338, 472, 547 |
| Lsp1109I | GCAGC | 1 cut(s) | 498 |
| LweI | GCATC | 2 cut(s) | 458, 514 |
| MaeI | CTAG | 2 cut(s) | 107, 480 |
| MaeIII | GTNAC | 1 cut(s) | 193 |
| MalI | GATC | 1 cut(s) | 294 |
| MboI | GATC | 1 cut(s) | 292 |
| MboII | GAAGA | 7 cut(s) | 21, 44, 58, 80, 130, 353, 533 |
| MluCI | AATT | 4 cut(s) | 17, 35, 311, 427 |
| MlyI | GAGTC | 1 cut(s) | 351 |
| MmeI | TCCRAC | 1 cut(s) | 262 |
| MnlI | CCTC | 2 cut(s) | 150, 212 |
| MseI | TTAA | 2 cut(s) | 168, 501 |
| MspI | CCGG | 2 cut(s) | 297, 459 |
| MspR9I | CCNGG | 2 cut(s) | 297, 460 |
| MvnI | CGCG | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 524 |
| NciI | CCSGG | 2 cut(s) | 297, 460 |
| NdeII | GATC | 1 cut(s) | 292 |
| NlaIV | GGNNCC | 1 cut(s) | 26 |
| PfeI | GAWTC | 3 cut(s) | 49, 219, 358 |
| PkrI | GCNGC | 3 cut(s) | 84, 488, 529 |
| PleI | GAGTC | 1 cut(s) | 350 |
| PpsI | GAGTC | 1 cut(s) | 350 |
| PspN4I | GGNNCC | 1 cut(s) | 26 |
| PspPI | GGNCC | 2 cut(s) | 25, 410 |
| SaqAI | TTAA | 2 cut(s) | 168, 501 |
| SatI | GCNGC | 3 cut(s) | 83, 487, 528 |
| Sau3AI | GATC | 1 cut(s) | 292 |
| Sau96I | GGNCC | 2 cut(s) | 25, 410 |
| SchI | GAGTC | 1 cut(s) | 351 |
| ScrFI | CCNGG | 2 cut(s) | 297, 460 |
| SetI | ASST | 8 cut(s) | 44, 76, 204, 257, 391, 474, 536, 548 |
| SfaNI | GCATC | 2 cut(s) | 458, 514 |
| SinI | GGWCC | 1 cut(s) | 25 |
| SmlI | CTYRAG | 1 cut(s) | 365 |
| SmoI | CTYRAG | 1 cut(s) | 365 |
| Sse9I | AATT | 4 cut(s) | 17, 35, 311, 427 |
| SsiI | CCGC | 2 cut(s) | 82, 528 |
| SspMI | CTAG | 2 cut(s) | 107, 480 |
| StyD4I | CCNGG | 2 cut(s) | 295, 458 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 4 cut(s) | 17, 35, 311, 427 |
| TauI | GCSGC | 2 cut(s) | 85, 530 |
| TfiI | GAWTC | 3 cut(s) | 49, 219, 358 |
| Tru1I | TTAA | 2 cut(s) | 168, 501 |
| Tru9I | TTAA | 2 cut(s) | 168, 501 |
| TseI | GCWGC | 1 cut(s) | 486 |
| TspDTI | ATGAA | 1 cut(s) | 419 |
| TspGWI | ACGGA | 1 cut(s) | 108 |
| VpaK11BI | GGWCC | 1 cut(s) | 25 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 212 |
| XspI | CTAG | 2 cut(s) | 107, 480 |