Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

8242968 .. 8245512

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATCAAAGTTATATCAGCAAAGCTATCAAGATCCGGATCTCCTCTTGTTGTCCTCGCTACTCGCCATGCCTTCCTTTTTGACATGGGACCGATGTGTTGGCTTAGGGTTGCAGATGACTTCTTTTCTGGGTTTTCTTGGTTGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGATAACAAATGGGCTTCGGTTTTAAGTATGGTGAATATGTATTATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

86

Amino Acids

9.79

Weight (kDa)

9.25

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hira	PF07569	3 - 44	3.2e-08	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	35
AclWI	GGATC	2 cut(s)	27, 46
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	2 cut(s)	25, 196
AluI	AGCT	2 cut(s)	25, 196
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	27, 46
Aor13HI	TCCGGA	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	89
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	37
BseAI	TCCGGA	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	102
Bsp13I	TCCGGA	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	3, 32, 38
BspEI	TCCGGA	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	27, 46
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	3, 32, 38
BssT1I	CCWWGG	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	104
BstKTI	GATC	3 cut(s)	6, 35, 41
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	3, 32, 38
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	32, 38
BstYI	RGATCY	2 cut(s)	32, 38
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	2 cut(s)	68, 85
CviJI	RGCY	5 cut(s)	25, 103, 164, 196, 224
CviKI_1	RGCY	5 cut(s)	25, 103, 164, 196, 224
DdeI	CTNAG	1 cut(s)	104
DpnI	GATC	3 cut(s)	5, 34, 40
DpnII	GATC	3 cut(s)	3, 32, 38
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	71, 88
FaiI	YATR	7 cut(s)	14, 69, 86, 210, 239, 248, 255
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	2 cut(s)	67, 84
FbaI	TGATCA	1 cut(s)	3
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	71, 88
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	30, 36
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	104
Hsp92II	CATG	2 cut(s)	71, 88
Kpn2I	TCCGGA	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 32, 38
LpnPI	CCDG	3 cut(s)	49, 114, 150
LweI	GCATC	1 cut(s)	145
MalI	GATC	3 cut(s)	5, 34, 40
MboI	GATC	3 cut(s)	3, 32, 38
MflI	RGATCY	2 cut(s)	32, 38
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	54, 65
MroI	TCCGGA	1 cut(s)	35
MseI	TTAA	1 cut(s)	233
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	3 cut(s)	3, 32, 38
NlaIII	CATG	2 cut(s)	71, 88
NlaIV	GGNNCC	1 cut(s)	90
PsiI	TTATAA	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	32, 38
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	3 cut(s)	3, 32, 38
Sau96I	GGNCC	1 cut(s)	89
SetI	ASST	2 cut(s)	27, 198
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	159
TaqI	TCGA	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.