Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

35908342 .. 35908647

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG324500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCACCACCGCTTCTCCGACCCCGTCAATCAGTGGTTGAAGGCCGCTGGAAAGCTTTCTCCGGCCGGCGGCACCAACCTCCCAGAGAAGGGCAGCTTCAAGTACTACGCCAAACTTGCCTACTCGACTGCCTCCTCCGCGATTGCAAGCTCGTCGAGACCACCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGATAGTACGTTTTTCTTCTCTCAAAGTTTCCATTTTTAGTTTCATTTTCTCAAAGTTTCCATTTTTAAATTTTGGGATTCTTGGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alba TAXi_C TAXi_N

Protein Analysis

101

Amino Acids

11.04

Weight (kDa)

10.56

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	140
AciI	CCGC	4 cut(s)	10, 45, 69, 138
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	2 cut(s)	104, 222
AfiI	CCNNNNNNNGG	3 cut(s)	68, 88, 89
AgsI	TTSAA	2 cut(s)	40, 100
AluBI	AGCT	3 cut(s)	55, 96, 150
AluI	AGCT	3 cut(s)	55, 96, 150
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	2 cut(s)	42, 63
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	105
BceAI	ACGGC	1 cut(s)	201
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BcoDI	GTCTC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	45, 70, 94
BlsI	GCNGC	3 cut(s)	46, 71, 95
BmcAI	AGTACT	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 175, 205
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 88, 89
Bse118I	RCCGGY	1 cut(s)	65
BseLI	CCNNNNNNNGG	3 cut(s)	68, 88, 89
BseRI	GAGGAG	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	44, 65
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	62, 66
BslI	CCNNNNNNNGG	3 cut(s)	68, 88, 89
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	44, 65
Bso31I	GGTCTC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	4 cut(s)	10, 45, 69, 138
BspANI	GGCC	2 cut(s)	44, 65
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	67, 148
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	203
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 137
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	44, 65
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	67, 148
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	103, 221
CviJI	RGCY	5 cut(s)	44, 55, 65, 96, 150
CviKI_1	RGCY	5 cut(s)	44, 55, 65, 96, 150
CviQI	GTAC	2 cut(s)	103, 221
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
DraI	TTTAAA	1 cut(s)	282
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	63
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
Fnu4HI	GCNGC	3 cut(s)	45, 70, 94
Fsp4HI	GCNGC	3 cut(s)	45, 70, 94
GluI	GCNGC	3 cut(s)	45, 70, 94
HaeIII	GGCC	2 cut(s)	44, 65
HapII	CCGG	2 cut(s)	62, 66
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	62, 66
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	19, 183, 203
Hpy188III	TCNNGA	1 cut(s)	156
Hpy99I	CGWCG	2 cut(s)	157, 187
HpyAV	CCTTC	2 cut(s)	34, 82
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	4, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 137
HpySE526I	ACGT	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	203
LpnPI	CCDG	4 cut(s)	33, 75, 79, 96
Lsp1109I	GCAGC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	223
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	222
MluCI	AATT	2 cut(s)	283, 301
MmeI	TCCRAC	2 cut(s)	42, 206
MnlI	CCTC	5 cut(s)	89, 142, 145, 181, 219
MroNI	GCCGGC	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	62, 66
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	116, 137
NaeI	GCCGGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	203
NgoMIV	GCCGGC	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 179
PdiI	GCCGGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	3 cut(s)	46, 71, 95
PspN4I	GGNNCC	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	2 cut(s)	104, 222
RsaNI	GTAC	2 cut(s)	103, 221
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	3 cut(s)	45, 70, 94
Sau3AI	GATC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	104
SetI	ASST	6 cut(s)	57, 81, 98, 152, 211, 226
Sse9I	AATT	2 cut(s)	283, 301
SsiI	CCGC	4 cut(s)	10, 45, 69, 138
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	2 cut(s)	125, 155
TasI	AATT	2 cut(s)	283, 301
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	2 cut(s)	47, 72
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	38
Tth111I	GACNNNGTC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.