Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

52767339 .. 52768663

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG450300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCAGGTTTACACAAAATGTGAGAGACGTGCTATGCCAACAATGATGAACTGTCTCCTTAATGATTCCTTGGCATCTCTAGTTACTTCAAACCCGAACCCATCTGCAAAAGATGCAGGCATAATCAAAGTTATATCAGCAAAACTATCAAGATCTGGATCAACTATTGTTGTTCTTCCGACTCGACATGCATTCCTCTTTGACATGGGCCTAATGTGTTGGCTTAGGGTTGCAGATGACCGCTTTCCTGGGTCGAATTTTGCAAGCTACTGGAATTTGACTTCAACTCAGAGCAGTGAGCTGGCTGCATTGCAGGGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

107

Amino Acids

11.73

Weight (kDa)

8.57

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hira	PF07569	16 - 105	1.8e-14	TUP1-like enhancer of split

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	166
AcsI	RAATTY	2 cut(s)	256, 274
AgsI	TTSAA	2 cut(s)	90, 285
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	247
AluBI	AGCT	2 cut(s)	267, 301
AluI	AGCT	2 cut(s)	267, 301
Alw26I	GTCTC	2 cut(s)	19, 59
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	256, 274
AspS9I	GGNCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	19, 59
BfaI	CTAG	1 cut(s)	80
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	2 cut(s)	83, 103
Bpu10I	CCTNAGC	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	69, 248
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	69, 248
BseJI	GATNNNNATC	1 cut(s)	157
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	292
BshFI	GGCC	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	19, 59
BsmBI	CGTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	152, 158
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	1 cut(s)	301
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	69, 248
BssMI	GATC	2 cut(s)	152, 158
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	118, 265, 303
BstDEI	CTNAG	2 cut(s)	224, 288
BstKTI	GATC	2 cut(s)	155, 161
BstMAI	GTCTC	2 cut(s)	19, 59
BstMBI	GATC	2 cut(s)	152, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	249
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	3 cut(s)	118, 265, 303
Cfr13I	GGNCC	1 cut(s)	208
CviAII	CATG	2 cut(s)	188, 205
CviJI	RGCY	5 cut(s)	210, 223, 267, 301, 305
CviKI_1	RGCY	5 cut(s)	210, 223, 267, 301, 305
DdeI	CTNAG	2 cut(s)	224, 288
DpnI	GATC	2 cut(s)	154, 160
DpnII	GATC	2 cut(s)	152, 158
Eco130I	CCWWGG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	2 cut(s)	191, 208
FaiI	YATR	5 cut(s)	35, 122, 134, 189, 206
FatI	CATG	2 cut(s)	187, 204
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	191, 208
HinfI	GANTC	2 cut(s)	65, 181
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	180, 291
Hpy188III	TCNNGA	2 cut(s)	150, 156
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	53
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	8 cut(s)	4, 107, 116, 191, 233, 263, 308, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	224, 288
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	191, 208
Kzo9I	GATC	2 cut(s)	152, 158
LpnPI	CCDG	7 cut(s)	102, 141, 234, 256, 261, 287, 299
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	2 cut(s)	83, 103
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	82, 317
MalI	GATC	2 cut(s)	154, 160
MboI	GATC	2 cut(s)	152, 158
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	2 cut(s)	256, 274
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	1 cut(s)	206
Mph1103I	ATGCAT	1 cut(s)	193
MseI	TTAA	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	152, 158
NlaIII	CATG	2 cut(s)	191, 208
NmuCI	GTSAC	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	191
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	152, 158
Sau96I	GGNCC	1 cut(s)	208
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	4 cut(s)	9, 31, 269, 303
SfaNI	GCATC	2 cut(s)	83, 103
Sse9I	AATT	2 cut(s)	256, 274
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	184, 254
TasI	AATT	2 cut(s)	256, 274
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	256, 274
XceI	RCATGY	1 cut(s)	191
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.