Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

37803188 .. 37803889

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAAAGGAAGAAGTGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCCCATTTAGTAATACTAGCACTACACAGCGACTGCCCCCACAATGTGATGATCATGGTTATTGTATGGATGAGAACCTACTTTTCTCTCCAACTGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAATGCTGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCACTTGTTCACGAGCAGCAGCTCTTTGGTGGTTTTGATATGATAGTTTATGGTTGTCATGACCCTGATATTGCACTCGATCTGAATTCAGAAACCCTCAAACTTTCCTATTCTTTCTTTCATCTCGATCTCCATCCAGAAACTCTCAAACTTTCCTATTCTTTCTTTCATCCAGAAACCCTCAAACTTCCATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003682 GO:0003723 GO:0003824 GO:0004365 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005811 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0006006 GO:0006007 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006735 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006915 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009277 GO:0009435 GO:0009628 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012501 GO:0015886 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016491 GO:0016620 GO:0016903 GO:0017144 GO:0018130 GO:0019220 GO:0019222 GO:0019318 GO:0019319 GO:0019320 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0023051 GO:0023056 GO:0030312 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032787 GO:0032872 GO:0032874 GO:0032991 GO:0033554 GO:0034404 GO:0034599 GO:0034641 GO:0034654 GO:0034655 GO:0035690 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0042866 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043408 GO:0043410 GO:0043436 GO:0043891 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045937 GO:0046031 GO:0046034 GO:0046364 GO:0046365 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051181 GO:0051186 GO:0051188 GO:0051234 GO:0051246 GO:0051247 GO:0051716 GO:0055086 GO:0055114 GO:0060255 GO:0061615 GO:0061620 GO:0061621 GO:0061718 GO:0065007 GO:0070302 GO:0070304 GO:0070887 GO:0070994 GO:0071214 GO:0071470 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0072593 GO:0080090 GO:0080134 GO:0080135 GO:0090407 GO:0097159 GO:0104004 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901678 GO:1902531 GO:1902533 GO:1990315 GO:1990841

KEGG Pathways

Metabolic & Signaling

ko00010 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04066 ko05010 map00010 map00710 map01100 map01110 map01120 map01130 map01200 map01230 map04066 map05010

Pfam Domains

Protein Families

Gp_dh_C Gp_dh_N

Protein Analysis

233

Amino Acids

26.98

Weight (kDa)

4.74

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	586
AdeI	CACNNNGTG	1 cut(s)	260
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	5 cut(s)	145, 161, 176, 182, 340
AhdI	GACNNNNNGTC	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	79, 111
AluBI	AGCT	1 cut(s)	523
AluI	AGCT	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	98
AlwNI	CAGNNNCTG	2 cut(s)	247, 487
ApeKI	GCWGC	4 cut(s)	421, 490, 517, 520
ApoI	RAATTY	1 cut(s)	586
AsuHPI	GGTGA	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	512
BbvI	GCAGC	4 cut(s)	408, 477, 529, 532
BccI	CCATC	2 cut(s)	23, 642
BclI	TGATCA	3 cut(s)	265, 346, 367
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	4 cut(s)	422, 491, 518, 521
BlsI	GCNGC	4 cut(s)	423, 492, 519, 522
BmeRI	GACNNNNNGTC	1 cut(s)	53
BsaBI	GATNNNNATC	2 cut(s)	120, 633
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	2 cut(s)	120, 633
BseGI	GGATG	5 cut(s)	10, 121, 289, 634, 670
BseJI	GATNNNNATC	2 cut(s)	120, 633
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	408, 477, 529, 532
BsmAI	GTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	5 cut(s)	265, 346, 367, 580, 628
BspHI	TCATGA	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	5 cut(s)	265, 346, 367, 580, 628
BssSI	CACGAG	1 cut(s)	512
Bst2BI	CACGAG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	396, 449
BstAPI	GCANNNNNTGC	1 cut(s)	487
BstF5I	GGATG	5 cut(s)	10, 121, 289, 634, 670
BstKTI	GATC	5 cut(s)	268, 349, 370, 583, 631
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	5 cut(s)	265, 346, 367, 580, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	4 cut(s)	408, 477, 529, 532
BtsCI	GGATG	5 cut(s)	10, 121, 289, 634, 670
CaiI	CAGNNNCTG	2 cut(s)	247, 487
CciI	TCATGA	1 cut(s)	559
CviAII	CATG	3 cut(s)	190, 269, 560
CviJI	RGCY	4 cut(s)	38, 312, 359, 523
CviKI_1	RGCY	4 cut(s)	38, 312, 359, 523
DpnI	GATC	5 cut(s)	267, 348, 369, 582, 630
DpnII	GATC	5 cut(s)	265, 346, 367, 580, 628
DraIII	CACNNNGTG	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	53
Eam1105I	GACNNNNNGTC	1 cut(s)	53
EcoRI	GAATTC	1 cut(s)	586
FaeI	CATG	3 cut(s)	193, 272, 563
FatI	CATG	3 cut(s)	189, 268, 559
FbaI	TGATCA	3 cut(s)	265, 346, 367
Fnu4HI	GCNGC	4 cut(s)	422, 491, 518, 521
FokI	GGATG	5 cut(s)	17, 128, 296, 621, 657
Fsp4HI	GCNGC	4 cut(s)	422, 491, 518, 521
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	4 cut(s)	422, 491, 518, 521
Hin1II	CATG	3 cut(s)	193, 272, 563
HinfI	GANTC	3 cut(s)	48, 121, 404
HphI	GGTGA	1 cut(s)	4
Hpy166II	GTNNAC	2 cut(s)	12, 511
Hpy188I	TCNGA	4 cut(s)	100, 403, 585, 592
Hpy188III	TCNNGA	6 cut(s)	365, 512, 560, 626, 638, 674
Hpy8I	GTNNAC	2 cut(s)	12, 511
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	2 cut(s)	396, 449
HpyCH4V	TGCA	2 cut(s)	424, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	193, 272, 563
Ksp22I	TGATCA	3 cut(s)	265, 346, 367
Kzo9I	GATC	5 cut(s)	265, 346, 367, 580, 628
LpnPI	CCDG	4 cut(s)	294, 579, 651, 687
Lsp1109I	GCAGC	4 cut(s)	408, 477, 529, 532
MaeI	CTAG	1 cut(s)	231
MalI	GATC	5 cut(s)	267, 348, 369, 582, 630
MboI	GATC	5 cut(s)	265, 346, 367, 580, 628
MboII	GAAGA	3 cut(s)	87, 100, 399
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	586
MlyI	GAGTC	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	8 cut(s)	62, 65, 106, 373, 448, 511, 608, 692
MseI	TTAA	1 cut(s)	700
MwoI	GCNNNNNNNGC	1 cut(s)	487
NdeII	GATC	5 cut(s)	265, 346, 367, 580, 628
NlaIII	CATG	3 cut(s)	193, 272, 563
NspI	RCATGY	1 cut(s)	193
PagI	TCATGA	1 cut(s)	559
PciI	ACATGT	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	121, 404
PflFI	GACNNNGTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	423, 492, 519, 522
PleI	GAGTC	1 cut(s)	42
PpsI	GAGTC	1 cut(s)	42
PscI	ACATGT	1 cut(s)	189
PstNI	CAGNNNCTG	2 cut(s)	247, 487
PsyI	GACNNNGTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	700
SatI	GCNGC	4 cut(s)	422, 491, 518, 521
Sau3AI	GATC	5 cut(s)	265, 346, 367, 580, 628
SchI	GAGTC	1 cut(s)	42
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	3 cut(s)	294, 442, 525
Sse9I	AATT	1 cut(s)	586
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	396, 449
TaqI	TCGA	2 cut(s)	579, 627
TasI	AATT	1 cut(s)	586
TfiI	GAWTC	2 cut(s)	121, 404
Tru1I	TTAA	1 cut(s)	700
Tru9I	TTAA	1 cut(s)	700
TseI	GCWGC	4 cut(s)	421, 490, 517, 520
TspDTI	ATGAA	2 cut(s)	611, 659
Tth111I	GACNNNGTC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	586
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.