Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

38226869 .. 38230243

Gene Structure 3375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029405

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGATGGTGCAAGAACAGGTCTACCTCATCTTTAAGTACATCACAATTCCAAGAAGGCCCTACCAACGAAAATTCCAAGCAGACAGGTAAGAGGACCAAGAGGGAGGTCATCGAGCTCAAAGTGGAGGGTCCGAAGATCAGAATCGGAGTCGACGGCAGAGGTGGAATCTGCTTTGGTCAGGAGCAGCGGAGTAGCTCTGGTAAGGAAGGACTTGGTGTTCGAGCCTTTATCAGAGGACTCCCAGAGGCTCTGAAATTGTCATGCAGGGCCATTGCAACTAAAAAAGCATTATTGAGGGGGCTGAAGCTTCTAGCATTAGGCCTGTTTCTTCAGGGTGGATTTTTCCTTGGCATGAAGGAACTAACTTTCGGGGTCGATATTGCAAAGATGAGATGGATGGGCATTCTACAGAGAATTGCAATAGGATATTTAGTAGCTGCCTTGTGCGAGATTTGGCTAAAGGGTGATGGTACTGTTAGTTCAGGATCATCTCTGCTGAGGAAGTATAAACTTCAGTTTGAGAAAGAGAGGAAGGGGAATCAGTTTGTGTTTCTTTTTAAAGAGCCATTTCAGTTATTCATTAAGTTCTTACCAATGGGTTGTGGTTTGATATGCAAGGAGATCTCAATTGCAGCAAATGTAGCCCAAAAGGAAATTGATAAGTACATCAAGATACCTGGAGAAGTCCTTCAGCAAATCTGCACAAATCTCTTCTTAGCGAAGAAGGGGAGAGCCTATTCCCCAATTGCTCTCGGACAAGAGTATTGGCTGCCCATTCTTACTGGTGCCAACACCAGGCTAAGCAACATGGCAAGCACCATGCTTGTCCTAAGGATCACAGACAGTAGCTCAACTTGTAGACATGGAGCTCCAATGTACCCCGCATTGTATAATGTAGAAAAGAGCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

306

Amino Acids

33.85

Weight (kDa)

9.91

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	788
AccI	GTMKAC	3 cut(s)	23, 153, 862
AciI	CCGC	2 cut(s)	190, 885
AclWI	GGATC	2 cut(s)	496, 845
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	4 cut(s)	317, 326, 500, 677
AfaI	GTAC	4 cut(s)	40, 475, 668, 881
AfiI	CCNNNNNNNGG	1 cut(s)	798
AjnI	CCWGG	2 cut(s)	679, 797
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	6 cut(s)	118, 198, 310, 440, 852, 872
AluI	AGCT	6 cut(s)	118, 198, 310, 440, 852, 872
Alw21I	GWGCWC	2 cut(s)	120, 874
AlwI	GGATC	2 cut(s)	496, 845
AoxI	GGCC	3 cut(s)	58, 270, 322
ApeKI	GCWGC	4 cut(s)	187, 440, 635, 772
ApoI	RAATTY	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	204, 236
Asp700I	GAANNNNTTC	1 cut(s)	690
AspS9I	GGNCC	4 cut(s)	59, 96, 131, 270
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	96, 131
AxyI	CCTNAGG	1 cut(s)	833
BanI	GGYRCC	1 cut(s)	788
BanII	GRGCYC	2 cut(s)	120, 874
Bbv12I	GWGCWC	2 cut(s)	120, 874
BbvCI	CCTCAGC	1 cut(s)	500
BbvI	GCAGC	4 cut(s)	199, 427, 647, 759
BccI	CCATC	3 cut(s)	390, 394, 464
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	681, 799
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	410
BglII	AGATCT	1 cut(s)	624
BisI	GCNGC	4 cut(s)	188, 441, 636, 773
BlpI	GCTNAGC	1 cut(s)	803
BlsI	GCNGC	4 cut(s)	189, 442, 637, 774
Bme1390I	CCNGG	2 cut(s)	681, 799
Bme18I	GGWCC	2 cut(s)	96, 131
BmgT120I	GGNCC	4 cut(s)	59, 96, 131, 270
BmiI	GGNNCC	2 cut(s)	132, 790
BmrFI	CCNGG	2 cut(s)	681, 799
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse1I	ACTGG	1 cut(s)	790
Bse21I	CCTNAGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	681, 799
BseDI	CCNNGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	790
BseXI	GCAGC	4 cut(s)	199, 427, 647, 759
BsgI	GTGCAG	1 cut(s)	688
BshFI	GGCC	3 cut(s)	60, 272, 324
BshNI	GGYRCC	1 cut(s)	788
BsiHKAI	GWGCWC	2 cut(s)	120, 874
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	60, 272, 324
Bsp1286I	GDGCHC	2 cut(s)	120, 874
Bsp143I	GATC	4 cut(s)	138, 488, 624, 837
Bsp1720I	GCTNAGC	1 cut(s)	803
BspACI	CCGC	2 cut(s)	190, 885
BspANI	GGCC	3 cut(s)	60, 272, 324
BspCNI	CTCAG	1 cut(s)	492
BspLI	GGNNCC	2 cut(s)	132, 790
BspPI	GGATC	2 cut(s)	496, 845
BspT107I	GGYRCC	1 cut(s)	788
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	790
BssECI	CCNNGG	1 cut(s)	349
BssMI	GATC	4 cut(s)	138, 488, 624, 837
BssT1I	CCWWGG	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	681, 799
Bst4CI	ACNGT	2 cut(s)	478, 848
Bst6I	CTCTTC	1 cut(s)	719
BstC8I	GCNNGC	1 cut(s)	817
BstDEI	CTNAG	4 cut(s)	500, 718, 803, 833
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	4 cut(s)	141, 491, 627, 840
BstMBI	GATC	4 cut(s)	138, 488, 624, 837
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	681, 799
BstSCI	CCNGG	2 cut(s)	679, 797
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	4 cut(s)	199, 427, 647, 759
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
Bsu36I	CCTNAGG	1 cut(s)	833
BsuRI	GGCC	3 cut(s)	60, 272, 324
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	817
Cfr13I	GGNCC	4 cut(s)	59, 96, 131, 270
Csp6I	GTAC	4 cut(s)	39, 474, 667, 880
CviAII	CATG	5 cut(s)	264, 355, 811, 823, 866
CviQI	GTAC	4 cut(s)	39, 474, 667, 880
DdeI	CTNAG	4 cut(s)	500, 718, 803, 833
DpnI	GATC	4 cut(s)	140, 490, 626, 839
DpnII	GATC	4 cut(s)	138, 488, 624, 837
DraI	TTTAAA	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	719
EarI	CTCTTC	1 cut(s)	719
Ecl136II	GAGCTC	2 cut(s)	118, 872
Eco130I	CCWWGG	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	2 cut(s)	120, 874
Eco47I	GGWCC	2 cut(s)	96, 131
Eco53kI	GAGCTC	2 cut(s)	118, 872
Eco57I	CTGAAG	4 cut(s)	317, 326, 500, 677
Eco81I	CCTNAGG	1 cut(s)	833
EcoICRI	GAGCTC	2 cut(s)	118, 872
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	679, 797
EcoT14I	CCWWGG	1 cut(s)	349
EcoT38I	GRGCYC	2 cut(s)	120, 874
ErhI	CCWWGG	1 cut(s)	349
FaeI	CATG	5 cut(s)	267, 358, 814, 826, 869
FaiI	YATR	8 cut(s)	265, 356, 510, 616, 812, 824, 867, 894
FatI	CATG	5 cut(s)	263, 354, 810, 822, 865
FauI	CCCGC	1 cut(s)	892
FblI	GTMKAC	3 cut(s)	23, 153, 862
Fnu4HI	GCNGC	4 cut(s)	188, 441, 636, 773
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	2 cut(s)	120, 874
Fsp4HI	GCNGC	4 cut(s)	188, 441, 636, 773
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	4 cut(s)	188, 441, 636, 773
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	60, 272, 324
Hin1II	CATG	5 cut(s)	267, 358, 814, 826, 869
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	5 cut(s)	144, 150, 168, 240, 541
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	3 cut(s)	24, 154, 863
Hpy188I	TCNGA	6 cut(s)	135, 143, 149, 236, 255, 758
Hpy188III	TCNNGA	3 cut(s)	182, 486, 673
Hpy8I	GTNNAC	3 cut(s)	24, 154, 863
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	6 cut(s)	50, 203, 352, 529, 701, 721
HpyCH4III	ACNGT	2 cut(s)	478, 848
HpyCH4V	TGCA	8 cut(s)	12, 267, 278, 386, 422, 618, 635, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	4 cut(s)	500, 718, 803, 833
Hsp92II	CATG	5 cut(s)	267, 358, 814, 826, 869
Kzo9I	GATC	4 cut(s)	138, 488, 624, 837
LmnI	GCTCC	3 cut(s)	184, 869, 877
Lsp1109I	GCAGC	4 cut(s)	199, 427, 647, 759
MaeI	CTAG	1 cut(s)	314
MalI	GATC	4 cut(s)	140, 490, 626, 839
MboI	GATC	4 cut(s)	138, 488, 624, 837
MboII	GAAGA	4 cut(s)	148, 323, 706, 736
MfeI	CAATTG	2 cut(s)	630, 747
MflI	RGATCY	1 cut(s)	624
MhlI	GDGCHC	2 cut(s)	120, 874
MluCI	AATT	7 cut(s)	47, 73, 257, 417, 630, 657, 747
MlyI	GAGTC	2 cut(s)	159, 234
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	3 cut(s)	35, 561, 585
MspA1I	CMGCKG	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	681, 799
MunI	CAATTG	2 cut(s)	630, 747
Mva1269I	GAATGC	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	681, 799
MwoI	GCNNNNNNNGC	1 cut(s)	644
NdeII	GATC	4 cut(s)	138, 488, 624, 837
NlaIII	CATG	5 cut(s)	267, 358, 814, 826, 869
NlaIV	GGNNCC	2 cut(s)	132, 790
PceI	AGGCCT	1 cut(s)	324
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	3 cut(s)	144, 168, 541
PkrI	GCNGC	4 cut(s)	189, 442, 637, 774
PleI	GAGTC	2 cut(s)	158, 234
PpsI	GAGTC	2 cut(s)	158, 234
Psp124BI	GAGCTC	2 cut(s)	120, 874
Psp6I	CCWGG	2 cut(s)	679, 797
PspGI	CCWGG	2 cut(s)	679, 797
PspN4I	GGNNCC	2 cut(s)	132, 790
PspPI	GGNCC	4 cut(s)	59, 96, 131, 270
PsrI	GAACNNNNNNTAC	2 cut(s)	466, 498
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	4 cut(s)	40, 475, 668, 881
RsaNI	GTAC	4 cut(s)	39, 474, 667, 880
SacI	GAGCTC	2 cut(s)	120, 874
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	35, 561, 585
SatI	GCNGC	4 cut(s)	188, 441, 636, 773
Sau3AI	GATC	4 cut(s)	138, 488, 624, 837
Sau96I	GGNCC	4 cut(s)	59, 96, 131, 270
SchI	GAGTC	2 cut(s)	159, 234
ScrFI	CCNGG	2 cut(s)	681, 799
SduI	GDGCHC	2 cut(s)	120, 874
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	2 cut(s)	96, 131
Sse9I	AATT	7 cut(s)	47, 73, 257, 417, 630, 657, 747
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	190, 885
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	2 cut(s)	120, 874
StuI	AGGCCT	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	679, 797
StyI	CCWWGG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	478, 848
TaqI	TCGA	4 cut(s)	114, 153, 223, 378
TasI	AATT	7 cut(s)	47, 73, 257, 417, 630, 657, 747
TatI	WGTACW	2 cut(s)	38, 666
TfiI	GAWTC	3 cut(s)	144, 168, 541
Tru1I	TTAA	3 cut(s)	35, 561, 585
Tru9I	TTAA	3 cut(s)	35, 561, 585
TseI	GCWGC	4 cut(s)	187, 440, 635, 772
TspDTI	ATGAA	2 cut(s)	371, 571
VpaK11BI	GGWCC	2 cut(s)	96, 131
XapI	RAATTY	1 cut(s)	73
XmiI	GTMKAC	3 cut(s)	23, 153, 862
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.