Rh2DG125900

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
10540178 .. 10540534
357 bp
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UTR
Exon/CDS
Intron
Rh2DG125900.1

Sequence Viewer

Length: 357 bp
ATGCTTACCAAGGAAGAGAAACTCAACTCACCAATGCTTACTCTTCGTAAGCTCGCCTCCATCTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCCCAGCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCCTTCAAGCAGTGGTCGGAGGCCCCCGGAAAGCTCTCTCCGGTGGCCGCCACCAACCTCCCTGAGAAGGGAAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCGGCGGCCGCAAGCTCGTTGAGTCCACCGACACCCTCGCTTTCTCCGACGACAACTCCACTTTTCAGATCACCTCTTCGGGATAG

Protein Analysis

118

Amino Acids

13.19

Weight (kDa)

6.09

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccII CGCG 2 cut(s) 120, 261
AciI CCGC 7 cut(s) 118, 145, 204, 259, 265, 276, 280
AcoI YGGCCR 3 cut(s) 115, 201, 277
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 239
AfiI CCNNNNNNNGG 2 cut(s) 223, 224
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 6 cut(s) 52, 108, 129, 190, 231, 286
AluI AGCT 6 cut(s) 52, 108, 129, 190, 231, 286
AoxI GGCC 4 cut(s) 115, 177, 201, 277
ApeKI GCWGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 21, 334
BbsI GAAGAC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 68, 85
BceAI ACGGC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 183
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 5 cut(s) 109, 118, 204, 277, 280
BlsI GCNGC 5 cut(s) 110, 119, 205, 278, 281
BmcAI AGTACT 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 9, 181, 271
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 224
BseDI CCNNGG 3 cut(s) 9, 181, 271
BseLI CCNNNNNNNGG 2 cut(s) 223, 224
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 260
BseX3I CGGCCG 2 cut(s) 115, 277
BseXI GCAGC 1 cut(s) 95
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 2 cut(s) 120, 261
Bsh1285I CGRYCG 3 cut(s) 118, 265, 280
BshFI GGCC 4 cut(s) 117, 179, 203, 279
BsiEI CGRYCG 3 cut(s) 118, 265, 280
BsiSI CCGG 2 cut(s) 183, 197
BslI CCNNNNNNNGG 2 cut(s) 223, 224
BsnI GGCC 4 cut(s) 117, 179, 203, 279
Bsp143I GATC 1 cut(s) 339
BspACI CCGC 7 cut(s) 118, 145, 204, 259, 265, 276, 280
BspANI GGCC 4 cut(s) 117, 179, 203, 279
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 2 cut(s) 120, 261
BspLI GGNNCC 1 cut(s) 180
BssECI CCNNGG 3 cut(s) 9, 181, 271
BssMI GATC 1 cut(s) 339
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 3 cut(s) 9, 48, 352
BstC8I GCNNGC 2 cut(s) 54, 284
BstDEI CTNAG 1 cut(s) 219
BstFNI CGCG 2 cut(s) 120, 261
BstKTI GATC 1 cut(s) 342
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 3 cut(s) 118, 265, 280
BstMWI GCNNNNNNNGC 5 cut(s) 114, 117, 126, 251, 273
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 2 cut(s) 120, 261
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 1 cut(s) 115
BstZI CGGCCG 2 cut(s) 115, 277
BsuRI GGCC 4 cut(s) 117, 179, 203, 279
BtsI GCAGTG 1 cut(s) 173
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 54, 284
CciNI GCGGCCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 238
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 3 cut(s) 115, 201, 277
EagI CGGCCG 2 cut(s) 115, 277
Eam1104I CTCTTC 3 cut(s) 9, 48, 352
EarI CTCTTC 3 cut(s) 9, 48, 352
EclXI CGGCCG 2 cut(s) 115, 277
Eco130I CCWWGG 1 cut(s) 9
Eco52I CGGCCG 2 cut(s) 115, 277
Eco57I CTGAAG 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FalI AAGNNNNNCTT 2 cut(s) 215, 247
Fnu4HI GCNGC 5 cut(s) 109, 118, 204, 277, 280
Fsp4HI GCNGC 5 cut(s) 109, 118, 204, 277, 280
GluI GCNGC 5 cut(s) 109, 118, 204, 277, 280
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 4 cut(s) 117, 179, 203, 279
HapII CCGG 2 cut(s) 183, 197
HgaI GACGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 1 cut(s) 293
HpaII CCGG 2 cut(s) 183, 197
HphI GGTGA 2 cut(s) 21, 334
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 4 cut(s) 154, 175, 319, 339
Hpy188III TCNNGA 3 cut(s) 88, 133, 351
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 2 cut(s) 116, 323
HpyAV CCTTC 3 cut(s) 104, 169, 217
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 117, 126, 251, 273
HpyF3I CTNAG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 339
LpnPI CCDG 4 cut(s) 118, 196, 210, 231
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 126
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 7 cut(s) 26, 35, 76, 89, 92, 115, 339
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 3 cut(s) 153, 177, 342
MnlI CCTC 8 cut(s) 67, 77, 169, 224, 278, 281, 317, 355
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 2 cut(s) 183, 197
MspR9I CCNGG 1 cut(s) 183
MvnI CGCG 2 cut(s) 120, 261
MwoI GCNNNNNNNGC 5 cut(s) 114, 117, 126, 251, 273
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 339
NlaIV GGNNCC 1 cut(s) 180
NmeAIII GCCGAG 1 cut(s) 252
NotI GCGGCCGC 1 cut(s) 277
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 315
PkrI GCNGC 5 cut(s) 110, 119, 205, 278, 281
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspFI CCCAGC 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 108
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SatI GCNGC 5 cut(s) 109, 118, 204, 277, 280
Sau3AI GATC 1 cut(s) 339
Sau96I GGNCC 1 cut(s) 178
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 183
SetI ASST 8 cut(s) 54, 110, 131, 192, 216, 233, 288, 347
SfaNI GCATC 1 cut(s) 126
SsiI CCGC 7 cut(s) 118, 145, 204, 259, 265, 276, 280
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 9
TaqI TCGA 2 cut(s) 132, 234
TatI WGTACW 1 cut(s) 237
TauI GCSGC 4 cut(s) 120, 206, 279, 282
TscAI CASTG 1 cut(s) 173
TseI GCWGC 1 cut(s) 108
TspRI CASTG 1 cut(s) 173
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.