Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

15386567 .. 15390634

Gene Structure 4068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG174600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGATGGCAACGACATCATCTCCGGCGACCTTCCCTTCCAACACGGCATGGTCCACTGCCCAAGCAGGAAACCAAGACTGCCCGACTTGCATGTCGATCTGGATCTACCGACGAGAAGCAACACCAAACCATGCGCCGCACCTCCAAGATGGCAACTACAACACGCCGCTCGTTGCTCGACCAAGACCGAAAAGCTCAAACTCGGTACTATGCGCGAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTCTTCTTGCTCTAATGCAAATGAAGATTTTGCTCAGGGAAATTGTTATAACCCAGAAGTTATTAGCCCTACAAAATTCAGGGATGTAGTTGCAAATGACGTCTTAATGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

120

Amino Acids

13.06

Weight (kDa)

6.04

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AasI	GACNNNNNNGTC	1 cut(s)	91
AatII	GACGTC	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	169
AccII	CGCG	1 cut(s)	215
AciI	CCGC	2 cut(s)	137, 167
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	348
AfaI	GTAC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	2 cut(s)	195, 228
AluI	AGCT	2 cut(s)	195, 228
AlwI	GGATC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	136, 215
AspS9I	GGNCC	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	51
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	137, 167
BlsI	GCNGC	2 cut(s)	138, 168
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	96, 102
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	2 cut(s)	137, 167
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	1 cut(s)	215
BspPI	GGATC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	96, 102
BssNI	GRCGYC	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	348
BstDEI	CTNAG	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	2 cut(s)	136, 215
BstKTI	GATC	2 cut(s)	99, 105
BstMBI	GATC	2 cut(s)	96, 102
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	94
BstUI	CGCG	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	136, 215
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	4 cut(s)	48, 91, 131, 235
CviJI	RGCY	3 cut(s)	195, 228, 315
CviKI_1	RGCY	3 cut(s)	195, 228, 315
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	98, 104
DpnII	GATC	2 cut(s)	96, 102
DrdI	GACNNNNNNGTC	1 cut(s)	91
DseDI	GACNNNNNNGTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	4 cut(s)	51, 94, 134, 238
FaiI	YATR	6 cut(s)	49, 92, 132, 211, 236, 297
FatI	CATG	4 cut(s)	47, 90, 130, 234
Fnu4HI	GCNGC	2 cut(s)	137, 167
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	137, 167
GlaI	GCGC	2 cut(s)	135, 214
GluI	GCNGC	2 cut(s)	137, 167
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	2 cut(s)	136, 215
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	4 cut(s)	51, 94, 134, 238
Hin6I	GCGC	2 cut(s)	134, 213
HinP1I	GCGC	2 cut(s)	134, 213
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	40, 45
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	3 cut(s)	90, 266, 341
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	4 cut(s)	51, 94, 134, 238
HspAI	GCGC	2 cut(s)	134, 213
Kzo9I	GATC	2 cut(s)	96, 102
LpnPI	CCDG	6 cut(s)	36, 51, 85, 269, 313, 315
MaeII	ACGT	1 cut(s)	348
MalI	GATC	2 cut(s)	98, 104
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	2 cut(s)	96, 102
MboII	GAAGA	2 cut(s)	243, 284
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	3 cut(s)	218, 289, 323
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	1 cut(s)	152
MseI	TTAA	2 cut(s)	353, 361
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	96, 102
NlaIII	CATG	4 cut(s)	51, 94, 134, 238
NspI	RCATGY	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	138, 168
PsiI	TTATAA	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	353, 361
SatI	GCNGC	2 cut(s)	137, 167
Sau3AI	GATC	2 cut(s)	96, 102
Sau96I	GGNCC	1 cut(s)	51
SetI	ASST	5 cut(s)	32, 144, 197, 230, 351
SinI	GGWCC	1 cut(s)	51
Sse9I	AATT	3 cut(s)	218, 289, 323
SsiI	CCGC	2 cut(s)	137, 167
StyI	CCWWGG	1 cut(s)	234
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	2 cut(s)	95, 178
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	3 cut(s)	218, 289, 323
TauI	GCSGC	2 cut(s)	139, 169
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	2 cut(s)	353, 361
Tru9I	TTAA	2 cut(s)	353, 361
TscAI	CASTG	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	323
XceI	RCATGY	1 cut(s)	94
ZraI	GACGTC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.