Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

36565114 .. 36567534

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACGGAGGGAAGAGGAGAAAGAAAGAAAAGAAGAAGGAAGAGGGAAGAATACTACGTTTTTATTTCCGGATGGGTGCTTTCTAAGGGAGAGATCAGAAACGAGAGAGGAGAGAGGAGAGTTTGTTTGAAGCTAATAGGCAAGAACTTGGTTTTGGATGGGTTTCTTTTCGGCATAAGTTGTTTGACTGTATTGAAGGCATCAACATCCGGGTCTGATTACCTATTTACCGGGAGCCGTGATGGAACACTAAAAAGATGGGCTGTGGCTGAAGATGCTGCTACCTCCTCGGCAACGTTTGAGTCTCATGTGGATTGGAGTTATGTCTTTGCAAGTTTTAAGAGTGTGTTCTCTTCCTTTGTACCTTTTAACAAGGCTAATGCAACCATGTACTGGTTGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGATAACAAATGGGCTTCGGTTTTAATCTGCTCTTCTGGAGAATCACTTCTTGTGACCAAAAATCCTGGTGATGTGGTTTACTTAGGATCAACATGCAAACAAGGAGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

DUF3337 WD40

Protein Analysis

192

Amino Acids

21.52

Weight (kDa)

9.26

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccIII	TCCGGA	1 cut(s)	68
AclI	AACGTT	1 cut(s)	296
AclWI	GGATC	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	363, 392
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgsI	TTSAA	3 cut(s)	130, 196, 433
AjnI	CCWGG	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	2 cut(s)	133, 451
AluI	AGCT	2 cut(s)	133, 451
Alw26I	GTCTC	2 cut(s)	309, 460
AlwI	GGATC	1 cut(s)	559
Aor13HI	TCCGGA	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	510
AsuC2I	CCSGG	2 cut(s)	211, 232
AsuHPI	GGTGA	1 cut(s)	545
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	4 cut(s)	66, 152, 236, 252
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	531
BcnI	CCSGG	2 cut(s)	211, 232
BcoDI	GTCTC	2 cut(s)	309, 460
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	211, 232, 531
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	3 cut(s)	211, 232, 531
BmsI	GCATC	3 cut(s)	209, 265, 400
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	2 cut(s)	211, 232
BsaJI	CCNNGG	2 cut(s)	288, 414
BsaWI	WCCGGW	1 cut(s)	68
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	288, 414
BseGI	GGATG	3 cut(s)	77, 163, 206
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	4 cut(s)	30, 123, 130, 277
BseXI	GCAGC	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	69, 210, 231
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	309, 460
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	93, 551
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	236
BspPI	GGATC	1 cut(s)	559
BspQI	GCTCTTC	1 cut(s)	502
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	2 cut(s)	288, 414
BssMI	GATC	2 cut(s)	93, 551
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	4 cut(s)	7, 35, 358, 502
BstDEI	CTNAG	2 cut(s)	84, 547
BstF5I	GGATG	3 cut(s)	77, 163, 206
BstKTI	GATC	2 cut(s)	96, 554
BstMAI	GTCTC	2 cut(s)	309, 460
BstMBI	GATC	2 cut(s)	93, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 425
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	3 cut(s)	209, 230, 529
BstV1I	GCAGC	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	77, 163, 206
Csp6I	GTAC	2 cut(s)	362, 391
CviAII	CATG	3 cut(s)	308, 388, 558
CviJI	RGCY	8 cut(s)	133, 237, 263, 269, 377, 419, 451, 479
CviKI_1	RGCY	8 cut(s)	133, 237, 263, 269, 377, 419, 451, 479
CviQI	GTAC	2 cut(s)	362, 391
DdeI	CTNAG	2 cut(s)	84, 547
DpnI	GATC	2 cut(s)	95, 553
DpnII	GATC	2 cut(s)	93, 551
Eam1104I	CTCTTC	4 cut(s)	7, 35, 358, 502
EarI	CTCTTC	4 cut(s)	7, 35, 358, 502
Eco130I	CCWWGG	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	311, 391, 561
FaiI	YATR	6 cut(s)	176, 309, 324, 389, 465, 559
FalI	AAGNNNNNCTT	1 cut(s)	558
FatI	CATG	3 cut(s)	307, 387, 557
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	3 cut(s)	84, 170, 193
Fsp4HI	GCNGC	1 cut(s)	279
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	522
HapII	CCGG	3 cut(s)	69, 210, 231
Hin1II	CATG	3 cut(s)	311, 391, 561
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	2 cut(s)	302, 506
HpaII	CCGG	3 cut(s)	69, 210, 231
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	98, 217
Hpy188III	TCNNGA	2 cut(s)	69, 501
Hpy8I	GTNNAC	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	30, 190
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	57, 296
HpyCH4V	TGCA	3 cut(s)	332, 383, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 425
HpyF3I	CTNAG	2 cut(s)	84, 547
HpySE526I	ACGT	2 cut(s)	57, 296
Hsp92II	CATG	3 cut(s)	311, 391, 561
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	93, 551
LguI	GCTCTTC	1 cut(s)	502
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	82, 223, 244, 379, 405, 486, 516, 543
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	3 cut(s)	209, 265, 400
MaeII	ACGT	2 cut(s)	57, 296
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	2 cut(s)	95, 553
MboI	GATC	2 cut(s)	93, 551
MboII	GAAGA	7 cut(s)	24, 45, 52, 59, 284, 345, 489
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	8, 36, 101, 108, 295, 298
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	510
MseI	TTAA	4 cut(s)	339, 369, 488, 577
MspI	CCGG	3 cut(s)	69, 210, 231
MspR9I	CCNGG	3 cut(s)	211, 232, 531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	275, 425
NciI	CCSGG	2 cut(s)	211, 232
NdeII	GATC	2 cut(s)	93, 551
NlaIII	CATG	3 cut(s)	311, 391, 561
NlaIV	GGNNCC	1 cut(s)	236
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp1406I	AACGTT	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	236
RsaI	GTAC	2 cut(s)	363, 392
RsaNI	GTAC	2 cut(s)	362, 391
SapI	GCTCTTC	1 cut(s)	502
SaqAI	TTAA	4 cut(s)	339, 369, 488, 577
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	93, 551
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	3 cut(s)	211, 232, 531
SetI	ASST	7 cut(s)	60, 135, 225, 287, 299, 367, 453
SfaNI	GCATC	3 cut(s)	209, 265, 400
Sse9I	AATT	1 cut(s)	423
StyD4I	CCNGG	3 cut(s)	209, 230, 529
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	60, 299
TaqI	TCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	423
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	4 cut(s)	339, 369, 488, 577
Tru9I	TTAA	4 cut(s)	339, 369, 488, 577
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	517
TspGWI	ACGGA	1 cut(s)	20
Van91I	CCANNNNNTGG	1 cut(s)	393
XceI	RCATGY	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.