Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009409.1

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

37640 .. 38804

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009409.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggctacagagtcagttagagtagtccatagtttcagcttcaatgggtctcagataaggcctaccatccctctctccccagctcgctttctgggtcttcgtcctcctcgttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctctcacctcatcttcactttcccagttctttgggaatctgcgtctcacctccaactcctcaaagacctctcatttacgccaacacagcgggagaaacctctctattttcgccatggctgccgatggcataagttgtttgactgtattgaaggcattaacatctgggtttgattacctatttactgggagccgcgatggaacactaaaaagatgggttgtgactgaagatgccactacctcctcagcaacctttgagtctcatgtggattgggtattcattttccttccaatatttaaatctagtatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007275 GO:0008144 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009845 GO:0009941 GO:0009987 GO:0016043 GO:0017076 GO:0030554 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048856 GO:0071840 GO:0090351 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EFG_C EFG_II EFG_IV GTP_EFTU GTP_EFTU_D2

Protein Analysis

158

Amino Acids

16.97

Weight (kDa)

10.47

Isoelectric Point (pI)

67.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	360
AciI	CCGC	2 cut(s)	255, 358
AcuI	CTGAAG	1 cut(s)	411
AgsI	TTSAA	2 cut(s)	43, 316
AluBI	AGCT	2 cut(s)	39, 83
AluI	AGCT	2 cut(s)	39, 83
Alw26I	GTCTC	3 cut(s)	54, 215, 429
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	163, 205
BbsI	GAAGAC	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	4 cut(s)	74, 284, 356, 372
BcoDI	GTCTC	3 cut(s)	54, 215, 429
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	2 cut(s)	285, 358
BlsI	GCNGC	2 cut(s)	286, 359
BmiI	GGNNCC	1 cut(s)	356
BmrI	ACTGGG	2 cut(s)	184, 360
BmsI	GCATC	1 cut(s)	385
BmuI	ACTGGG	2 cut(s)	184, 360
BpiI	GAAGAC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	190, 355
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	65, 423
BseNI	ACTGG	2 cut(s)	190, 355
BseRI	GAGGAG	3 cut(s)	96, 214, 397
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	61
BsmAI	GTCTC	3 cut(s)	54, 215, 429
BsmBI	CGTCTC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	279
BspACI	CCGC	2 cut(s)	255, 358
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	64, 422
BspFNI	CGCG	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	190, 355
BssECI	CCNNGG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	2 cut(s)	51, 409
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	360
BstMAI	GTCTC	3 cut(s)	54, 215, 429
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 284
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	85
CseI	GACGC	1 cut(s)	197
CviAII	CATG	2 cut(s)	280, 428
CviJI	RGCY	6 cut(s)	5, 39, 61, 83, 284, 357
CviKI_1	RGCY	6 cut(s)	5, 39, 61, 83, 284, 357
DdeI	CTNAG	2 cut(s)	51, 409
DraI	TTTAAA	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	283, 431
FaiI	YATR	4 cut(s)	30, 281, 296, 429
FatI	CATG	2 cut(s)	279, 427
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	2 cut(s)	285, 358
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	285, 358
FspBI	CTAG	1 cut(s)	468
GluI	GCNGC	2 cut(s)	285, 358
GsaI	CCCAGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	61
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	283, 431
HinfI	GANTC	3 cut(s)	11, 202, 422
HphI	GGTGA	2 cut(s)	163, 205
Hpy188I	TCNGA	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	310, 461
HpyCH4III	ACNGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 284
HpyF3I	CTNAG	2 cut(s)	51, 409
Hsp92II	CATG	2 cut(s)	283, 431
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	5 cut(s)	77, 93, 203, 315, 336
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	385
MlyI	GAGTC	2 cut(s)	20, 431
MmeI	TCCRAC	1 cut(s)	243
MseI	TTAA	2 cut(s)	323, 462
MspA1I	CMGCKG	1 cut(s)	255
MvnI	CGCG	1 cut(s)	360
MwoI	GCNNNNNNNGC	2 cut(s)	252, 284
NcoI	CCATGG	1 cut(s)	279
NlaIII	CATG	2 cut(s)	283, 431
NlaIV	GGNNCC	1 cut(s)	356
NmuCI	GTSAC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	286, 359
PleI	GAGTC	2 cut(s)	19, 430
PpsI	GAGTC	2 cut(s)	19, 430
PspFI	CCCAGC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	356
SaqAI	TTAA	2 cut(s)	323, 462
SatI	GCNGC	2 cut(s)	285, 358
SchI	GAGTC	2 cut(s)	20, 431
SetI	ASST	9 cut(s)	41, 85, 176, 218, 236, 267, 345, 407, 419
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	6
SmiI	ATTTAAAT	1 cut(s)	463
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	255, 358
SspI	AATATT	1 cut(s)	459
SspMI	CTAG	1 cut(s)	468
StuI	AGGCCT	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	279
SwaI	ATTTAAAT	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	310
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	323, 462
Tru9I	TTAA	2 cut(s)	323, 462
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	433
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.