Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

38660295 .. 38665866

Gene Structure 5572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG195700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTCGAGTCGAAGAGTGCTTAGAACTCAGAAGAGTACCTATAATTCTATAAATCTGGTGGCCGGAAGAGTCGAAGACTGGGGTGTTTCGTTCGACGGCTCGACGACAGTAGGCGGAGGCCAGAGAGATCTTCTTGTCCGACTTCGATTGGACTTCTGGAAATGGAACACGGGCTCATCGATTCGTATCTCGACAAGTGGTACTCCTCTCGACTCGGTACTGTGCGCGAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTGTTCTTGCTCCGATGCAAATAAAGATTTTGCTCGGGGAAATTGTTATAACCCAGAAGTTATTAGCACTACAAAATTCAGGGATGCAGTTGCAAATGACGTCTTAATGGTATCATCTTGCTCTTTTTCCTTCTTCTCCATGTTTCTTATGTGCATGGTTAATCAGACTCGGGCTAATTTAATGGTTCTCATGAATTTGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

155

Amino Acids

17.24

Weight (kDa)

9.19

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AatII	GACGTC	1 cut(s)	363
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	335, 454
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	3 cut(s)	37, 202, 219
AgsI	TTSAA	2 cut(s)	235, 460
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Ama87I	CYCGRG	2 cut(s)	294, 429
AoxI	GGCC	2 cut(s)	60, 118
ApoI	RAATTY	2 cut(s)	335, 454
AspLEI	GCGC	1 cut(s)	227
AvaI	CYCGRG	2 cut(s)	294, 429
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	127
BmeT110I	CYCGRG	2 cut(s)	294, 429
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	265, 334
BmuI	ACTGGG	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	349
BseJI	GATNNNNATC	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	62, 120
BshVI	ATCGAT	1 cut(s)	179
BsiHKCI	CYCGRG	2 cut(s)	294, 429
BsiSI	CCGG	1 cut(s)	63
BsnI	GGCC	2 cut(s)	62, 120
BsoBI	CYCGRG	2 cut(s)	294, 429
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	62, 120
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	109, 222
Bst6I	CTCTTC	3 cut(s)	7, 26, 61
BstACI	GRCGYC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	20, 27
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	62, 120
BsuTUI	ATCGAT	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	450
CfoI	GCGC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	36, 201, 218
CviAII	CATG	4 cut(s)	247, 400, 415, 451
CviJI	RGCY	6 cut(s)	62, 99, 120, 174, 240, 434
CviKI_1	RGCY	6 cut(s)	62, 99, 120, 174, 240, 434
CviQI	GTAC	3 cut(s)	36, 201, 218
DdeI	CTNAG	2 cut(s)	20, 27
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	3 cut(s)	7, 26, 61
EarI	CTCTTC	3 cut(s)	7, 26, 61
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	176
Eco88I	CYCGRG	2 cut(s)	294, 429
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	4 cut(s)	250, 403, 418, 454
FaiI	YATR	8 cut(s)	42, 50, 248, 309, 401, 410, 416, 452
FatI	CATG	4 cut(s)	246, 399, 414, 450
FokI	GGATG	1 cut(s)	356
FriOI	GRGCYC	1 cut(s)	176
GlaI	GCGC	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	62, 120
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	4 cut(s)	250, 403, 418, 454
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	5 cut(s)	7, 69, 181, 212, 427
HpaII	CCGG	1 cut(s)	63
Hpy188I	TCNGA	5 cut(s)	30, 140, 259, 274, 426
Hpy188III	TCNNGA	4 cut(s)	157, 190, 209, 451
Hpy99I	CGWCG	2 cut(s)	98, 106
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	2 cut(s)	109, 222
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	278, 347, 353, 414
HpyF3I	CTNAG	2 cut(s)	20, 27
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	250, 403, 418, 454
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	7 cut(s)	41, 64, 76, 134, 142, 325, 327
LweI	GCATC	2 cut(s)	265, 334
MaeII	ACGT	1 cut(s)	360
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	6 cut(s)	24, 43, 78, 86, 122, 385
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	6 cut(s)	43, 230, 301, 335, 436, 454
MlyI	GAGTC	4 cut(s)	16, 78, 206, 421
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	2 cut(s)	110, 216
MseI	TTAA	3 cut(s)	365, 420, 440
MspI	CCGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	250, 403, 418, 454
PagI	TCATGA	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	181
PleI	GAGTC	4 cut(s)	15, 77, 206, 421
PpsI	GAGTC	4 cut(s)	15, 77, 206, 421
PsiI	TTATAA	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	3 cut(s)	37, 202, 219
RsaNI	GTAC	3 cut(s)	36, 201, 218
SaqAI	TTAA	3 cut(s)	365, 420, 440
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	4 cut(s)	16, 78, 206, 421
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	3 cut(s)	41, 242, 363
SfaNI	GCATC	2 cut(s)	265, 334
Sse9I	AATT	6 cut(s)	43, 230, 301, 335, 436, 454
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	464
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	109, 222
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	9 cut(s)	5, 10, 72, 93, 101, 145, 179, 191, 210
TasI	AATT	6 cut(s)	43, 230, 301, 335, 436, 454
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	3 cut(s)	365, 420, 440
Tru9I	TTAA	3 cut(s)	365, 420, 440
TspDTI	ATGAA	1 cut(s)	467
XapI	RAATTY	2 cut(s)	335, 454
ZraI	GACGTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.