Rh2BG119400

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001543
Physical Location & Seq
Reverse (-)
10150664 .. 10172184
21521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG119400.1

Sequence Viewer

Length: 639 bp
ATGGAGAAACATCAAGTCCATCCTCAACACCTCCAGCTCAGAAGAGCCTCTCCGGCACCGAAGACTTCGCCATCTCAATCGCAGCTTGGGAGGCCCAGCGAGACTGCTCCTCCTTCAACTTCACCCGACGGTGGCTCAGCCTTGAGTGGATCTAAAACCTCTTGTCAAACTTCGATTGGTTTTCTAGATATCGAACACCGGCTCATCGATTCGTATAGCAACAAGTGGTACTCCTCTCGATTCAGTACTGTGCACGAATTGAAAAGCTTGACCATGGTGGATTCCGATTCTTCTCTGATGCAAATGGAGATTTTACTCGGGAAAATTGTTATAGCCCAGAAGTTATTAGCACTACAAAATTCAGGGGTGCAGTTGCAAACGACGCTCTTGATGTGTGGCAATGATGCTCCAATTAGTGCTGCGCAAATGCTAGGGGAAGTGAGTAGGCTTCTTAAACATGGAGGGGTCTATATTTTGATAACTTATGGTAATCCTAAAGTTAGAATACCTCATTTGAGCCGGCCAATATATGAAAAACCCTTCAATCATGATGTGATTACTACACTTCATCTGTTAATAGTGGGATATACTTCAACGATGTCTGTCGATCTCCAGGTTGTCATAGGCAGTCACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

212

Amino Acids

23.17

Weight (kDa)

8.89

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 55
AclWI GGATC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 230, 247
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 4 cut(s) 117, 262, 544, 594
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 3 cut(s) 37, 85, 267
AluI AGCT 3 cut(s) 37, 85, 267
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 95
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 2 cut(s) 92, 521
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 82, 419
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 317
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 94, 406
BccI CCATC 2 cut(s) 27, 79
BciT130I CCWGG 1 cut(s) 614
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 185, 431
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 2 cut(s) 83, 420
BlpI GCTNAGC 1 cut(s) 136
BlsI GCNGC 2 cut(s) 84, 421
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 614
BmsI GCATC 2 cut(s) 288, 394
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 2 cut(s) 17, 596
Bpu1102I GCTNAGC 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 163
Bsa29I ATCGAT 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 2 cut(s) 198, 519
Bse3DI GCAATG 1 cut(s) 406
BseBI CCWGG 1 cut(s) 614
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 52, 150
BseRI GAGGAG 2 cut(s) 99, 223
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 2 cut(s) 94, 406
BseYI CCCAGC 1 cut(s) 95
BsgI GTGCAG 1 cut(s) 389
BshFI GGCC 2 cut(s) 94, 523
BshNI GGYRCC 1 cut(s) 55
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 3 cut(s) 53, 199, 520
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 2 cut(s) 94, 523
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 149, 607
Bsp1720I GCTNAGC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 273
BspANI GGCC 2 cut(s) 94, 523
BspCNI CTCAG 2 cut(s) 51, 149
BspDI ATCGAT 1 cut(s) 207
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 406
BsrFI RCCGGY 2 cut(s) 198, 519
BssAI RCCGGY 2 cut(s) 198, 519
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 149, 607
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 2 cut(s) 131, 250
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 38, 136
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 2 cut(s) 152, 610
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 149, 607
BstMWI GCNNNNNNNGC 3 cut(s) 53, 91, 382
BstNI CCWGG 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 612
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 94, 406
BstV2I GAAGAC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 2 cut(s) 94, 523
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 521
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 2 cut(s) 198, 519
Cfr13I GGNCC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 1 cut(s) 391
Csp6I GTAC 2 cut(s) 229, 246
CviAII CATG 3 cut(s) 274, 458, 548
CviQI GTAC 2 cut(s) 229, 246
DdeI CTNAG 2 cut(s) 38, 136
DpnI GATC 2 cut(s) 151, 609
DpnII GATC 2 cut(s) 149, 607
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 273
Eco32I GATATC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 612
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 3 cut(s) 277, 461, 551
FatI CATG 3 cut(s) 273, 457, 547
Fnu4HI GCNGC 2 cut(s) 83, 420
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 2 cut(s) 83, 420
FspBI CTAG 2 cut(s) 185, 431
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 83, 420
GsaI CCCAGC 1 cut(s) 99
GsuI CTGGAG 2 cut(s) 17, 596
HaeIII GGCC 2 cut(s) 94, 523
HapII CCGG 3 cut(s) 53, 199, 520
HgaI GACGC 1 cut(s) 391
HhaI GCGC 1 cut(s) 424
Hin1II CATG 3 cut(s) 277, 461, 551
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 4 cut(s) 209, 240, 281, 287
HpaII CCGG 3 cut(s) 53, 199, 520
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 41, 286, 297
Hpy188III TCNNGA 5 cut(s) 185, 237, 319, 388, 548
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 2 cut(s) 131, 385
HpyAV CCTTC 2 cut(s) 123, 550
HpyCH4III ACNGT 2 cut(s) 131, 250
HpyCH4V TGCA 4 cut(s) 253, 301, 370, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 91, 382
HpyF3I CTNAG 2 cut(s) 38, 136
Hsp92II CATG 3 cut(s) 277, 461, 551
HspAI GCGC 1 cut(s) 422
KroI GCCGGC 1 cut(s) 519
KroNI GCCGGC 1 cut(s) 521
Kzo9I GATC 2 cut(s) 149, 607
LguI GCTCTTC 1 cut(s) 37
LmnI GCTCC 2 cut(s) 112, 412
LpnPI CCDG 9 cut(s) 47, 66, 109, 212, 348, 350, 533, 599, 626
Lsp1109I GCAGC 2 cut(s) 94, 406
LweI GCATC 2 cut(s) 288, 394
MaeI CTAG 2 cut(s) 185, 431
MaeIII GTNAC 1 cut(s) 629
MalI GATC 2 cut(s) 151, 609
MboI GATC 2 cut(s) 149, 607
MboII GAAGA 3 cut(s) 54, 73, 282
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 4 cut(s) 257, 324, 358, 411
MnlI CCTC 9 cut(s) 33, 41, 58, 84, 120, 169, 244, 455, 519
MroNI GCCGGC 1 cut(s) 519
MseI TTAA 3 cut(s) 453, 575, 637
MspI CCGG 3 cut(s) 53, 199, 520
MspR9I CCNGG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 53, 91, 382
NaeI GCCGGC 1 cut(s) 521
NcoI CCATGG 1 cut(s) 273
NdeII GATC 2 cut(s) 149, 607
NgoMIV GCCGGC 1 cut(s) 519
NlaIII CATG 3 cut(s) 277, 461, 551
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 629
NsbI TGCGCA 1 cut(s) 423
PagI TCATGA 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 37
PdiI GCCGGC 1 cut(s) 521
PfeI GAWTC 4 cut(s) 209, 240, 281, 287
PkrI GCNGC 2 cut(s) 84, 421
Psp6I CCWGG 1 cut(s) 612
PspFI CCCAGC 1 cut(s) 95
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 149
RsaI GTAC 2 cut(s) 230, 247
RsaNI GTAC 2 cut(s) 229, 246
SapI GCTCTTC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 453, 575, 637
SatI GCNGC 2 cut(s) 83, 420
Sau3AI GATC 2 cut(s) 149, 607
Sau96I GGNCC 1 cut(s) 93
ScaI AGTACT 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 1 cut(s) 255
SetI ASST 7 cut(s) 33, 39, 87, 161, 269, 511, 618
SfaNI GCATC 2 cut(s) 288, 394
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 4 cut(s) 257, 324, 358, 411
SspMI CTAG 2 cut(s) 185, 431
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 131, 250
TaqI TCGA 5 cut(s) 173, 192, 207, 238, 606
TasI AATT 4 cut(s) 257, 324, 358, 411
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 4 cut(s) 209, 240, 281, 287
Tru1I TTAA 3 cut(s) 453, 575, 637
Tru9I TTAA 3 cut(s) 453, 575, 637
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 82, 419
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 2 cut(s) 546, 557
VneI GTGCAC 1 cut(s) 251
XapI RAATTY 1 cut(s) 358
XbaI TCTAGA 1 cut(s) 184
XspI CTAG 2 cut(s) 185, 431
ZrmI AGTACT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.