Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Reverse (-)

31094119 .. 31103445

Gene Structure 9327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCAGGAAACAAAAGGCTCAGGAAATCCAGGCCATTAAGCTGGCTGCAATCATTATGCAGGCATAAGTTGTTTGACTGTATTGAAGGCATCAACATCGGGTCTGATTACCTATTTACTGGGAGCCGTGATGGAACACTAAAAAGATGGCCTGTGGCTGAAGATGGTGCTACCTCCTCAACAACGTTTGAGTCTCATGTGGATTGGTCAGCTGATCTTGTGGAGAAAACGATACATGTTAGCCATTTCCAACAGCTCACTATCGGGAATGTTCTTGCCTTTGAGCAATGTCATCGCACTCTTGCCGAGAATTACATGACTGATTATGTTGTGTTCATGGATCGTTTAATGAGCACCGAAGAAGATGTGAAGTTACTTGTTAAGAAAAGAATTGTCAAAAATATGATCGCTGCGGACACCACAGTACTATCGCCCGAGGGCTCGGCTAAGGATCTGATCAAGAAGCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016579 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

DUF3337 WD40

Protein Analysis

157

Amino Acids

17.83

Weight (kDa)

7.75

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	77 - 143	9.7e-17	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	413
AclI	AACGTT	1 cut(s)	185
AclWI	GGATC	2 cut(s)	348, 459
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	86
AjnI	CCWGG	2 cut(s)	4, 29
AluBI	AGCT	4 cut(s)	42, 212, 256, 466
AluI	AGCT	4 cut(s)	42, 212, 256, 466
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	348, 459
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	32, 149
ApeKI	GCWGC	2 cut(s)	46, 410
AvaI	CYCGRG	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	443
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	33, 397
BccI	CCATC	3 cut(s)	125, 141, 158
BceAI	ACGGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 275, 309
BciT130I	CCWGG	2 cut(s)	6, 31
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	198
BisI	GCNGC	2 cut(s)	47, 411
BlsI	GCNGC	2 cut(s)	48, 412
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	2 cut(s)	6, 31
BmeT110I	CYCGRG	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	2 cut(s)	6, 31
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	129
Bpu10I	CCTNAGC	2 cut(s)	20, 447
BsaJI	CCNNGG	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	124
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	6, 31
BseDI	CCNNGG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	33, 397
BshFI	GGCC	2 cut(s)	34, 151
BsiHKAI	GWGCWC	1 cut(s)	356
BsiHKCI	CYCGRG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	34, 151
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	2 cut(s)	356, 443
Bsp143I	GATC	5 cut(s)	214, 340, 405, 451, 456
BspACI	CCGC	1 cut(s)	413
BspANI	GGCC	2 cut(s)	34, 151
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	125
BspPI	GGATC	2 cut(s)	348, 459
BsrDI	GCAATG	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	5 cut(s)	214, 340, 405, 451, 456
Bst2UI	CCWGG	2 cut(s)	6, 31
Bst4CI	ACNGT	2 cut(s)	80, 424
BstC8I	GCNNGC	2 cut(s)	44, 62
BstDEI	CTNAG	2 cut(s)	20, 447
BstKTI	GATC	5 cut(s)	217, 343, 408, 454, 459
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	214, 340, 405, 451, 456
BstNI	CCWGG	2 cut(s)	6, 31
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	4, 29
BstV1I	GCAGC	2 cut(s)	33, 397
BstX2I	RGATCY	1 cut(s)	451
BstXI	CCANNNNNNTGG	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	451
BsuRI	GGCC	2 cut(s)	34, 151
BtgZI	GCGATG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	44, 62
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	4 cut(s)	197, 236, 316, 337
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	20, 447
DpnI	GATC	5 cut(s)	216, 342, 407, 453, 458
DpnII	GATC	5 cut(s)	214, 340, 405, 451, 456
Eco24I	GRGCYC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	4, 29
EcoT38I	GRGCYC	1 cut(s)	443
FaeI	CATG	4 cut(s)	200, 239, 319, 340
FaiI	YATR	8 cut(s)	58, 66, 198, 237, 317, 327, 338, 404
FatI	CATG	4 cut(s)	196, 235, 315, 336
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	47, 411
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	47, 411
GluI	GCNGC	2 cut(s)	47, 411
HaeIII	GGCC	2 cut(s)	34, 151
Hin1II	CATG	4 cut(s)	200, 239, 319, 340
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	106, 456
Hpy188III	TCNNGA	3 cut(s)	22, 265, 460
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	80, 424
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	49, 60
HpyF3I	CTNAG	2 cut(s)	20, 447
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	4 cut(s)	200, 239, 319, 340
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	5 cut(s)	214, 340, 405, 451, 456
LmnI	GCTCC	1 cut(s)	123
LpnPI	CCDG	8 cut(s)	7, 16, 18, 28, 43, 46, 105, 165
Lsp1109I	GCAGC	2 cut(s)	33, 397
LweI	GCATC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	5 cut(s)	216, 342, 407, 453, 458
MboI	GATC	5 cut(s)	214, 340, 405, 451, 456
MboII	GAAGA	3 cut(s)	173, 371, 374
MflI	RGATCY	1 cut(s)	451
MhlI	GDGCHC	2 cut(s)	356, 443
MluCI	AATT	2 cut(s)	310, 390
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	184, 187, 430
MseI	TTAA	3 cut(s)	38, 347, 381
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	6, 31
MvaI	CCWGG	2 cut(s)	6, 31
NdeII	GATC	5 cut(s)	214, 340, 405, 451, 456
NlaIII	CATG	4 cut(s)	200, 239, 319, 340
NlaIV	GGNNCC	1 cut(s)	125
NmeAIII	GCCGAG	2 cut(s)	331, 422
NspI	RCATGY	1 cut(s)	239
PciI	ACATGT	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	48, 412
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	235
Psp1406I	AACGTT	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	4, 29
PspGI	CCWGG	2 cut(s)	4, 29
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	3 cut(s)	38, 347, 381
SatI	GCNGC	2 cut(s)	47, 411
Sau3AI	GATC	5 cut(s)	214, 340, 405, 451, 456
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	6, 31
SduI	GDGCHC	2 cut(s)	356, 443
SetI	ASST	7 cut(s)	44, 114, 176, 188, 214, 258, 468
SfaNI	GCATC	1 cut(s)	99
Sse9I	AATT	2 cut(s)	310, 390
SsiI	CCGC	1 cut(s)	413
StyD4I	CCNGG	2 cut(s)	4, 29
TaaI	ACNGT	2 cut(s)	80, 424
TaiI	ACGT	1 cut(s)	188
TasI	AATT	2 cut(s)	310, 390
TatI	WGTACW	1 cut(s)	424
Tru1I	TTAA	3 cut(s)	38, 347, 381
Tru9I	TTAA	3 cut(s)	38, 347, 381
TseI	GCWGC	2 cut(s)	46, 410
TspDTI	ATGAA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.