Rh2DG120900

Methyltransferase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001543
Physical Location & Seq
Reverse (-)
10044039 .. 10053246
9208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG120900.1

Sequence Viewer

Length: 369 bp
ATGGAACACCGGCTCATCGATTCGTATGGCAACAAGTGGTACTCCTCTCGATTCGGTACTGTGCACCAATTGAAAAGCTTGACCATGGTGGATTCTGATTCTTCTCTGATGCAAATGGAGATTTTGCTCGGGAAAATTGTTCTAGCCCAGAAGTTATTAGCACTACAAAATTCAGGGGTGCAGTTGCAAACGACGCTCTTGATGATAACTTATGGTGATCCTAAAGTTAGAATACCTCATTTGAGCCGGCCAATGTATGACTGGAGTATTGTTCTGTGTATCCAACTAATGAGGGAAAATGTTGCTAGTATATGGTTTCTGCTATTTTTATATTTTAGATATGAAAAACCCTTCAATCGTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11

Protein Analysis

122

Amino Acids

14.39

Weight (kDa)

9.13

Isoelectric Point (pI)

24.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 248
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 2 cut(s) 41, 58
AgsI TTSAA 2 cut(s) 73, 355
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw21I GWGCWC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 1 cut(s) 248
ApaLI GTGCAC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 227
AvaI CYCGRG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BciVI GTATCC 1 cut(s) 290
BfaI CTAG 2 cut(s) 143, 306
BfuI GTATCC 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 128
BmsI GCATC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 283
Bsa29I ATCGAT 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 84
Bse118I RCCGGY 2 cut(s) 9, 246
Bse1I ACTGG 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 10, 247
BsnI GGCC 1 cut(s) 250
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 84
BspANI GGCC 1 cut(s) 250
BspDI ATCGAT 1 cut(s) 18
BspPI GGATC 1 cut(s) 212
BsrFI RCCGGY 2 cut(s) 9, 246
BsrI ACTGG 1 cut(s) 266
BssAI RCCGGY 2 cut(s) 9, 246
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 84
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 66
Bsu15I ATCGAT 1 cut(s) 18
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 248
Cfr10I RCCGGY 2 cut(s) 9, 246
ClaI ATCGAT 1 cut(s) 18
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 40, 57
CviAII CATG 1 cut(s) 85
CviJI RGCY 5 cut(s) 13, 78, 146, 246, 250
CviKI_1 RGCY 5 cut(s) 13, 78, 146, 246, 250
CviQI GTAC 2 cut(s) 40, 57
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 88
FaiI YATR 8 cut(s) 27, 86, 213, 258, 311, 313, 331, 342
FatI CATG 1 cut(s) 84
FspBI CTAG 2 cut(s) 143, 306
GsuI CTGGAG 1 cut(s) 283
HaeIII GGCC 1 cut(s) 250
HapII CCGG 2 cut(s) 10, 247
HgaI GACGC 1 cut(s) 202
Hin1II CATG 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 76
HinfI GANTC 4 cut(s) 20, 51, 92, 98
HpaII CCGG 2 cut(s) 10, 247
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 2 cut(s) 97, 108
Hpy188III TCNNGA 4 cut(s) 48, 130, 199, 359
Hpy8I GTNNAC 1 cut(s) 64
Hpy99I CGWCG 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 64, 112, 181, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 1 cut(s) 88
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 23, 159, 161, 247, 260
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 143, 306
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 93
MfeI CAATTG 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 3 cut(s) 68, 135, 169
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 3 cut(s) 55, 246, 285
MroNI GCCGGC 1 cut(s) 246
MspI CCGG 2 cut(s) 10, 247
MunI CAATTG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 193
NaeI GCCGGC 1 cut(s) 248
NcoI CCATGG 1 cut(s) 84
NdeII GATC 1 cut(s) 217
NgoMIV GCCGGC 1 cut(s) 246
NlaIII CATG 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 248
PfeI GAWTC 4 cut(s) 20, 51, 92, 98
RsaI GTAC 2 cut(s) 41, 58
RsaNI GTAC 2 cut(s) 40, 57
Sau3AI GATC 1 cut(s) 217
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 80, 238
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 3 cut(s) 68, 135, 169
SspMI CTAG 2 cut(s) 143, 306
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 18, 49
TasI AATT 3 cut(s) 68, 135, 169
TfiI GAWTC 4 cut(s) 20, 51, 92, 98
TspDTI ATGAA 1 cut(s) 357
VneI GTGCAC 1 cut(s) 62
XapI RAATTY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
XspI CTAG 2 cut(s) 143, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.