Splicing factor 3B subunit
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD06G1065100.v1.1 |
| pyrus_communis | pycom04g07360 |
| rosa_chinensis | RchiOBHm_Chr2g0151271 |
| rosa_laevigata | RLG00000029209 RLG00000029405 |
| rosa_multiflora | Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008 |
| rosa_roxburghii | Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880 |
| rosa_rugosa | Rorug01G0017700 Rorug05G0318400 Rorug07G0300800 |
| rosa_samantha | Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300 |
| rosa_wichuraiana | Rw5G015030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 506 |
| AccII | CGCG | 1 cut(s) | 84 |
| AciI | CCGC | 2 cut(s) | 79, 492 |
| AclWI | GGATC | 1 cut(s) | 284 |
| AcsI | RAATTY | 2 cut(s) | 308, 353 |
| AfaI | GTAC | 1 cut(s) | 422 |
| AgsI | TTSAA | 4 cut(s) | 43, 65, 149, 409 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 84, 116, 330, 362 |
| AluBI | AGCT | 2 cut(s) | 71, 252 |
| AluI | AGCT | 2 cut(s) | 71, 252 |
| AlwI | GGATC | 1 cut(s) | 284 |
| Ama87I | CYCGRG | 1 cut(s) | 138 |
| ApeKI | GCWGC | 1 cut(s) | 450 |
| ApoI | RAATTY | 2 cut(s) | 308, 353 |
| AspLEI | GCGC | 1 cut(s) | 84 |
| AspS9I | GGNCC | 1 cut(s) | 24 |
| AvaI | CYCGRG | 1 cut(s) | 138 |
| AvaII | GGWCC | 1 cut(s) | 24 |
| BbvI | GCAGC | 1 cut(s) | 462 |
| BccI | CCATC | 3 cut(s) | 210, 449, 465 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BfaI | CTAG | 2 cut(s) | 104, 444 |
| BfuAI | ACCTGC | 1 cut(s) | 506 |
| BisI | GCNGC | 3 cut(s) | 80, 451, 492 |
| BlpI | GCTNAGC | 1 cut(s) | 502 |
| BlsI | GCNGC | 3 cut(s) | 81, 452, 493 |
| Bme1390I | CCNGG | 1 cut(s) | 294 |
| Bme18I | GGWCC | 1 cut(s) | 24 |
| BmeT110I | CYCGRG | 1 cut(s) | 138 |
| BmgT120I | GGNCC | 1 cut(s) | 24 |
| BmiI | GGNNCC | 1 cut(s) | 25 |
| BmrFI | CCNGG | 1 cut(s) | 294 |
| BmsI | GCATC | 2 cut(s) | 422, 478 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 502 |
| BsaJI | CCNNGG | 1 cut(s) | 137 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 330, 360 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseDI | CCNNGG | 1 cut(s) | 137 |
| BseGI | GGATG | 3 cut(s) | 262, 307, 487 |
| BseMII | CTCAG | 2 cut(s) | 63, 516 |
| BseXI | GCAGC | 1 cut(s) | 462 |
| Bsh1236I | CGCG | 1 cut(s) | 84 |
| BsiHKCI | CYCGRG | 1 cut(s) | 138 |
| BsiWI | CGTACG | 1 cut(s) | 420 |
| BsoBI | CYCGRG | 1 cut(s) | 138 |
| Bsp143I | GATC | 1 cut(s) | 289 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 502 |
| BspACI | CCGC | 2 cut(s) | 79, 492 |
| BspCNI | CTCAG | 2 cut(s) | 64, 515 |
| BspFNI | CGCG | 1 cut(s) | 84 |
| BspLI | GGNNCC | 1 cut(s) | 25 |
| BspMI | ACCTGC | 1 cut(s) | 506 |
| BspPI | GGATC | 1 cut(s) | 284 |
| BssECI | CCNNGG | 1 cut(s) | 137 |
| BssMI | GATC | 1 cut(s) | 289 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| BstC8I | GCNNGC | 1 cut(s) | 385 |
| BstDEI | CTNAG | 2 cut(s) | 72, 502 |
| BstF5I | GGATG | 3 cut(s) | 262, 307, 487 |
| BstFNI | CGCG | 1 cut(s) | 84 |
| BstHHI | GCGC | 1 cut(s) | 84 |
| BstKTI | GATC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 289 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstSCI | CCNGG | 1 cut(s) | 292 |
| BstUI | CGCG | 1 cut(s) | 84 |
| BstV1I | GCAGC | 1 cut(s) | 462 |
| BtgZI | GCGATG | 1 cut(s) | 468 |
| BtsCI | GGATG | 3 cut(s) | 262, 307, 487 |
| BveI | ACCTGC | 1 cut(s) | 506 |
| Cac8I | GCNNGC | 1 cut(s) | 385 |
| CfoI | GCGC | 1 cut(s) | 84 |
| Cfr13I | GGNCC | 1 cut(s) | 24 |
| Csp6I | GTAC | 1 cut(s) | 421 |
| CviJI | RGCY | 5 cut(s) | 71, 252, 266, 365, 476 |
| CviKI_1 | RGCY | 5 cut(s) | 71, 252, 266, 365, 476 |
| CviQI | GTAC | 1 cut(s) | 421 |
| DdeI | CTNAG | 2 cut(s) | 72, 502 |
| DpnI | GATC | 1 cut(s) | 291 |
| DpnII | GATC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 1 cut(s) | 24 |
| Eco88I | CYCGRG | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| FaiI | YATR | 6 cut(s) | 174, 213, 344, 380, 389, 479 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 23, 55 |
| Fnu4HI | GCNGC | 3 cut(s) | 80, 451, 492 |
| FokI | GGATG | 3 cut(s) | 269, 314, 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 80, 451, 492 |
| FspBI | CTAG | 2 cut(s) | 104, 444 |
| GlaI | GCGC | 1 cut(s) | 83 |
| GluI | GCNGC | 3 cut(s) | 80, 451, 492 |
| HhaI | GCGC | 1 cut(s) | 84 |
| Hin6I | GCGC | 1 cut(s) | 82 |
| HinP1I | GCGC | 1 cut(s) | 82 |
| HinfI | GANTC | 3 cut(s) | 46, 216, 339 |
| Hpy188I | TCNGA | 3 cut(s) | 28, 230, 430 |
| Hpy188III | TCNNGA | 3 cut(s) | 6, 287, 350 |
| HpyAV | CCTTC | 2 cut(s) | 355, 403 |
| HpyCH4V | TGCA | 1 cut(s) | 332 |
| HpyF3I | CTNAG | 2 cut(s) | 72, 502 |
| HspAI | GCGC | 1 cut(s) | 82 |
| Kzo9I | GATC | 1 cut(s) | 289 |
| LmnI | GCTCC | 1 cut(s) | 447 |
| LpnPI | CCDG | 5 cut(s) | 279, 306, 335, 369, 511 |
| Lsp1109I | GCAGC | 1 cut(s) | 462 |
| LweI | GCATC | 2 cut(s) | 422, 478 |
| MaeI | CTAG | 2 cut(s) | 104, 444 |
| MaeIII | GTNAC | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 291 |
| MboI | GATC | 1 cut(s) | 289 |
| MboII | GAAGA | 6 cut(s) | 21, 43, 55, 77, 127, 497 |
| MluCI | AATT | 5 cut(s) | 17, 34, 308, 353, 391 |
| MlyI | GAGTC | 1 cut(s) | 348 |
| MmeI | TCCRAC | 1 cut(s) | 259 |
| MnlI | CCTC | 2 cut(s) | 147, 209 |
| MseI | TTAA | 3 cut(s) | 165, 357, 465 |
| MspR9I | CCNGG | 1 cut(s) | 294 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| MvnI | CGCG | 1 cut(s) | 84 |
| NdeII | GATC | 1 cut(s) | 289 |
| NlaIV | GGNNCC | 1 cut(s) | 25 |
| PfeI | GAWTC | 2 cut(s) | 46, 216 |
| Pfl23II | CGTACG | 1 cut(s) | 420 |
| PkrI | GCNGC | 3 cut(s) | 81, 452, 493 |
| PleI | GAGTC | 1 cut(s) | 347 |
| PpsI | GAGTC | 1 cut(s) | 347 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspLI | CGTACG | 1 cut(s) | 420 |
| PspN4I | GGNNCC | 1 cut(s) | 25 |
| PspPI | GGNCC | 1 cut(s) | 24 |
| RsaI | GTAC | 1 cut(s) | 422 |
| RsaNI | GTAC | 1 cut(s) | 421 |
| SaqAI | TTAA | 3 cut(s) | 165, 357, 465 |
| SatI | GCNGC | 3 cut(s) | 80, 451, 492 |
| Sau3AI | GATC | 1 cut(s) | 289 |
| Sau96I | GGNCC | 1 cut(s) | 24 |
| SchI | GAGTC | 1 cut(s) | 348 |
| ScrFI | CCNGG | 1 cut(s) | 294 |
| SetI | ASST | 6 cut(s) | 73, 201, 254, 438, 500, 512 |
| SfaNI | GCATC | 2 cut(s) | 422, 478 |
| SinI | GGWCC | 1 cut(s) | 24 |
| Sse9I | AATT | 5 cut(s) | 17, 34, 308, 353, 391 |
| SsiI | CCGC | 2 cut(s) | 79, 492 |
| SspMI | CTAG | 2 cut(s) | 104, 444 |
| StyD4I | CCNGG | 1 cut(s) | 292 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 5 cut(s) | 17, 34, 308, 353, 391 |
| TauI | GCSGC | 2 cut(s) | 82, 494 |
| TfiI | GAWTC | 2 cut(s) | 46, 216 |
| Tru1I | TTAA | 3 cut(s) | 165, 357, 465 |
| Tru9I | TTAA | 3 cut(s) | 165, 357, 465 |
| TseI | GCWGC | 1 cut(s) | 450 |
| TspDTI | ATGAA | 1 cut(s) | 498 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| VpaK11BI | GGWCC | 1 cut(s) | 24 |
| XapI | RAATTY | 2 cut(s) | 308, 353 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 209 |
| XspI | CTAG | 2 cut(s) | 104, 444 |