Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

66838980 .. 66845855

Gene Structure 6876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG454300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAGGGTCCGGATTCGGACGGCGAGGAAATCGGGGAGTCGAAGTGGGTCGGGTCGAGTCTGGGCCAGTGGATGCGCACTCTTCCGGACTTCTTCTGTGAATTCGGCGACTCAGAACAACCGAAGCTTGGGAGGCCCAGCGAGACTGCTCCTCCTTCAACTTCACCCGACGGTGGCTCAGCCTTGAGTGGATCTAAAACCTCTTGTCAAACTTCTATTGGTTTTCTAGATATCGAACACCGGCTCATCTATTCGTATCGCAACAAGTGGTACTCCTCTCGATTCGGTACTGTGCACGAATTGAAAAGCTTGACCATGGTGGATTCTGATTCTTCTCTGATGCAAATGGAGATTTTGCTCGGGAAAATTGTTATCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

126

Amino Acids

13.84

Weight (kDa)

4.7

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	77
AccIII	TCCGGA	2 cut(s)	10, 85
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	2 cut(s)	272, 289
AfiI	CCNNNNNNNGG	2 cut(s)	128, 173
AgsI	TTSAA	2 cut(s)	159, 304
AluBI	AGCT	2 cut(s)	127, 309
AluI	AGCT	2 cut(s)	127, 309
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	2 cut(s)	10, 85
AoxI	GGCC	2 cut(s)	64, 134
ApaLI	GTGCAC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	8, 64, 135
AsuHPI	GGTGA	1 cut(s)	156
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	297
BceAI	ACGGC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	227, 379
BlpI	GCTNAGC	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	8
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	8, 64, 135
BmiI	GGNNCC	1 cut(s)	9
BmsI	GCATC	2 cut(s)	63, 330
Bpu1102I	GCTNAGC	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	2 cut(s)	10, 85
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 173
Bse118I	RCCGGY	1 cut(s)	240
Bse1I	ACTGG	1 cut(s)	67
BseAI	TCCGGA	2 cut(s)	10, 85
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	128, 173
BseMII	CTCAG	2 cut(s)	126, 192
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	2 cut(s)	141, 265
BseSI	GKGCMC	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	137
BshFI	GGCC	2 cut(s)	66, 136
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	11, 86, 241
BslI	CCNNNNNNNGG	2 cut(s)	128, 173
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	66, 136
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp13I	TCCGGA	2 cut(s)	10, 85
Bsp143I	GATC	1 cut(s)	191
Bsp1720I	GCTNAGC	1 cut(s)	178
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	2 cut(s)	66, 136
BspCNI	CTCAG	2 cut(s)	125, 191
BspEI	TCCGGA	2 cut(s)	10, 85
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	240
BsrI	ACTGG	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	173, 292
Bst6I	CTCTTC	1 cut(s)	87
BstDEI	CTNAG	2 cut(s)	112, 178
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	66, 136
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	8, 64, 135
Csp6I	GTAC	2 cut(s)	271, 288
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	66, 127, 136, 177, 182, 244, 309
CviKI_1	RGCY	7 cut(s)	66, 127, 136, 177, 182, 244, 309
CviQI	GTAC	2 cut(s)	271, 288
DdeI	CTNAG	2 cut(s)	112, 178
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	319
FaiI	YATR	1 cut(s)	317
FatI	CATG	1 cut(s)	315
FokI	GGATG	1 cut(s)	85
FspAI	RTGCGCAY	1 cut(s)	77
FspBI	CTAG	2 cut(s)	227, 379
FspI	TGCGCA	1 cut(s)	77
GlaI	GCGC	1 cut(s)	77
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	2 cut(s)	66, 136
HapII	CCGG	3 cut(s)	11, 86, 241
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	2 cut(s)	125, 307
HinfI	GANTC	7 cut(s)	14, 38, 58, 110, 282, 323, 329
HpaII	CCGG	3 cut(s)	11, 86, 241
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	19, 115, 328, 339
Hpy188III	TCNNGA	5 cut(s)	11, 86, 227, 279, 361
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	173, 292
HpyCH4V	TGCA	2 cut(s)	295, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	112, 178
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	2 cut(s)	10, 85
Kzo9I	GATC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	6 cut(s)	24, 47, 80, 99, 151, 254
LweI	GCATC	2 cut(s)	63, 330
MaeI	CTAG	2 cut(s)	227, 379
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	74, 85, 324
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	3 cut(s)	101, 299, 366
MlyI	GAGTC	3 cut(s)	47, 67, 104
MnlI	CCTC	5 cut(s)	19, 126, 162, 211, 286
MroI	TCCGGA	2 cut(s)	10, 85
MspI	CCGG	3 cut(s)	11, 86, 241
MwoI	GCNNNNNNNGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	9
NsbI	TGCGCA	1 cut(s)	77
PfeI	GAWTC	4 cut(s)	14, 282, 323, 329
PleI	GAGTC	3 cut(s)	46, 66, 104
PpsI	GAGTC	3 cut(s)	46, 66, 104
PspFI	CCCAGC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	3 cut(s)	8, 64, 135
PsuI	RGATCY	1 cut(s)	191
RsaI	GTAC	2 cut(s)	272, 289
RsaNI	GTAC	2 cut(s)	271, 288
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	3 cut(s)	8, 64, 135
SchI	GAGTC	3 cut(s)	47, 67, 104
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	3 cut(s)	129, 203, 311
SfaNI	GCATC	2 cut(s)	63, 330
SinI	GGWCC	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	101, 299, 366
SspMI	CTAG	2 cut(s)	227, 379
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	2 cut(s)	173, 292
TaqI	TCGA	4 cut(s)	41, 56, 234, 280
TasI	AATT	3 cut(s)	101, 299, 366
TfiI	GAWTC	4 cut(s)	14, 282, 323, 329
TscAI	CASTG	1 cut(s)	74
TspRI	CASTG	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	8
XapI	RAATTY	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	226
XspI	CTAG	2 cut(s)	227, 379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.