Rh3AG238400
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
24802608 .. 24806098
3491 bp
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UTR
Exon/CDS
Intron
Rh3AG238400.1

Sequence Viewer

Length: 192 bp
ATGGTCAAGAACCCTACCAGTGGTACTCCTCTCGACTCGGTACTGTGCGCGAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTCTTCTTGCTCTGATGCAAATAAAGATTTTGCTCGGGGAAATTGTTATAACCCAGAAGTTATTAGCACTACAAAATTCAGGGATGTAGTTGCAAATGACGTCTTAATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

6.89

Weight (kDa)

6.01

Isoelectric Point (pI)

20.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AatII GACGTC 1 cut(s) 186
AccII CGCG 1 cut(s) 50
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 25, 42
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 58
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Ama87I CYCGRG 1 cut(s) 117
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 117
BmeT110I CYCGRG 1 cut(s) 117
BmsI GCATC 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 18
BseRI GAGGAG 1 cut(s) 18
Bsh1236I CGCG 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 69
BspFNI CGCG 1 cut(s) 50
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 183
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 50
BstUI CGCG 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 25
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 2 cut(s) 24, 41
CviAII CATG 1 cut(s) 70
CviJI RGCY 1 cut(s) 63
CviKI_1 RGCY 1 cut(s) 63
CviQI GTAC 2 cut(s) 24, 41
Eco130I CCWWGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 71, 132
FatI CATG 1 cut(s) 69
FokI GGATG 1 cut(s) 179
GlaI GCGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 2 cut(s) 35, 83
Hpy188I TCNGA 2 cut(s) 82, 97
Hpy188III TCNNGA 2 cut(s) 7, 32
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 101, 176
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 1 cut(s) 48
LpnPI CCDG 3 cut(s) 31, 148, 150
LweI GCATC 1 cut(s) 88
MaeII ACGT 1 cut(s) 183
MboII GAAGA 1 cut(s) 78
MluCI AATT 3 cut(s) 53, 124, 158
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 1 cut(s) 39
MseI TTAA 1 cut(s) 188
MvnI CGCG 1 cut(s) 50
NcoI CCATGG 1 cut(s) 69
NlaIII CATG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 83
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PsiI TTATAA 1 cut(s) 132
RsaI GTAC 2 cut(s) 25, 42
RsaNI GTAC 2 cut(s) 24, 41
SaqAI TTAA 1 cut(s) 188
SchI GAGTC 1 cut(s) 29
SetI ASST 2 cut(s) 65, 186
SfaNI GCATC 1 cut(s) 88
Sse9I AATT 3 cut(s) 53, 124, 158
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 53, 124, 158
TfiI GAWTC 1 cut(s) 83
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TscAI CASTG 1 cut(s) 25
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 158
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.