Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

20745934 .. 20751699

Gene Structure 5766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCTAGATATCGAACACCGGCTCATTATTCGTATCGCGACAAGTGGTACTTCTCTCGACTTGGTACTATGCACGAAATTGAAAAGCTTGACCATGGTGGATTCTGATTCTTCTCTGATGCAAATGAAGCATTATGCAGGCATGCCGCTACCTCCTCTTCAACCTTTGAGTCTCATGTGGATTGGGTCGAGCATTTTCGATGCCAAGGCTGGAATTGCTTTGAATGACAACTTTGTGAAGCTTGTCTCTTGGTATGATAACAAATGGGCTTTGGTTTTAAGTATGTCTGCTCTTACCGGAGAATCACTTCCTGTGACCAAAAATCCTGGTGATGTGGTTTACTTAGGATCAACATGCAAACAAGGAGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008553 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0015672 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0034220 GO:0036442 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:0099131 GO:0099132 GO:1902600

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

124

Amino Acids

13.56

Weight (kDa)

6.03

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	94 - 124	6e-06	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	355
AfaI	GTAC	2 cut(s)	49, 66
AgsI	TTSAA	3 cut(s)	82, 161, 223
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	2 cut(s)	87, 241
AluI	AGCT	2 cut(s)	87, 241
Alw26I	GTCTC	2 cut(s)	176, 250
AlwI	GGATC	1 cut(s)	355
Asp700I	GAANNNNTTC	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	176, 250
BfaI	CTAG	1 cut(s)	5
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	108, 190
BsaJI	CCNNGG	2 cut(s)	93, 204
BsaWI	WCCGGW	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	93, 204
BseRI	GAGGAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	19, 297
BsmAI	GTCTC	2 cut(s)	176, 250
Bsp143I	GATC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	93
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	93, 204
BssMI	GATC	1 cut(s)	347
BssT1I	CCWWGG	2 cut(s)	93, 204
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	139, 143
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	176, 250
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 215
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	145, 357
BstSCI	CCNGG	1 cut(s)	325
BstUI	CGCG	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	93
BtuMI	TCGCGA	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	139, 143
Cfr10I	RCCGGY	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	48, 65
CviAII	CATG	4 cut(s)	94, 142, 175, 354
CviJI	RGCY	5 cut(s)	22, 87, 209, 241, 269
CviKI_1	RGCY	5 cut(s)	22, 87, 209, 241, 269
CviQI	GTAC	2 cut(s)	48, 65
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	93, 204
Eco32I	GATATC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	2 cut(s)	93, 204
ErhI	CCWWGG	2 cut(s)	93, 204
FaeI	CATG	4 cut(s)	97, 145, 178, 357
FaiI	YATR	8 cut(s)	70, 95, 135, 143, 176, 255, 284, 355
FalI	AAGNNNNNCTT	3 cut(s)	34, 66, 354
FatI	CATG	4 cut(s)	93, 141, 174, 353
Fnu4HI	GCNGC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	146
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	146
HapII	CCGG	2 cut(s)	19, 297
Hin1II	CATG	4 cut(s)	97, 145, 178, 357
HindIII	AAGCTT	2 cut(s)	85, 239
HinfI	GANTC	4 cut(s)	101, 107, 169, 302
HpaII	CCGG	2 cut(s)	19, 297
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	106, 117
Hpy188III	TCNNGA	2 cut(s)	37, 56
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	72, 121, 137, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 215
HpyF3I	CTNAG	1 cut(s)	343
Hsp92II	CATG	4 cut(s)	97, 145, 178, 357
Kzo9I	GATC	1 cut(s)	347
LpnPI	CCDG	7 cut(s)	32, 123, 195, 310, 312, 324, 339
LweI	GCATC	2 cut(s)	108, 190
MaeI	CTAG	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	349
MboI	GATC	1 cut(s)	347
MboII	GAAGA	2 cut(s)	102, 149
MluCI	AATT	2 cut(s)	77, 213
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	2 cut(s)	162, 165
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	278, 373
MspI	CCGG	2 cut(s)	19, 297
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	127, 215
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	347
NlaIII	CATG	4 cut(s)	97, 145, 178, 357
NmuCI	GTSAC	1 cut(s)	313
NruI	TCGCGA	1 cut(s)	38
NspI	RCATGY	2 cut(s)	145, 357
PaeI	GCATGC	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	3 cut(s)	101, 107, 302
PkrI	GCNGC	1 cut(s)	147
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	2 cut(s)	49, 66
RsaNI	GTAC	2 cut(s)	48, 65
SaqAI	TTAA	2 cut(s)	278, 373
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	4 cut(s)	89, 154, 166, 243
SfaNI	GCATC	2 cut(s)	108, 190
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	2 cut(s)	77, 213
SsiI	CCGC	1 cut(s)	146
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	93, 204
TaqI	TCGA	4 cut(s)	12, 57, 188, 198
TasI	AATT	2 cut(s)	77, 213
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	3 cut(s)	101, 107, 302
Tru1I	TTAA	2 cut(s)	278, 373
Tru9I	TTAA	2 cut(s)	278, 373
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	1 cut(s)	140
XceI	RCATGY	2 cut(s)	145, 357
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.