Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001543

Physical Location & Seq

Genomic Coordinates Forward (+)

66846134 .. 66854032

Gene Structure 7899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG454400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGAATCAGGATTTTAGTCTTCCTTTACTGTCAGAAGTGTTCTAAAATTGGTCTACAATTCTTTCTTGGAACTTGGTCTTTTGGAGCTGAAAGCTTCTGTCTTCTATGCCTTGATAATATATTGTTGCTATCACCACTTTTTGCACCTGCGCTCTGTCCAAACCTTGATATAGGAACTCTTGATTCATTGATGTGTGGCAATGATGCTCCAATTAGTGCTGCACAAATGTTAGGGGAAGTGAGTAGGCTTCTTAAACATGGAGGGGTCTATATTTTGATAACTTATGGTGATCCTAAAGTAAGAATGCCTCATTTGAGCTGGCCAATGTACGACTGGAGTACTGTTATGTGTATCCAACGTAAATGGAATTGGAGGCCAAAGAAGCAAGTTGCATTCAGAAATCCTAAGAATTCTATGTCAACTGAGAATGCAAGCAAGCCTATTTGGAGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

152

Amino Acids

17.24

Weight (kDa)

9.19

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001543)

Species	Orthologous Gene IDs
malus_domestica	MD06G1065100.v1.1
pyrus_communis	pycom04g07360
rosa_chinensis	RchiOBHm_Chr2g0151271
rosa_laevigata	RLG00000029209 RLG00000029405
rosa_multiflora	Rmu_sc0003498.1_g000002 Rmu_sc0009409.1_g000008
rosa_roxburghii	Rroxscaffold_1G00017800 Rroxscaffold_1G00024970 Rroxscaffold_1G00030460 Rroxscaffold_2G00106410 Rroxscaffold_2G00133320 Rroxscaffold_3G00220170 Rroxscaffold_4G00313270 Rroxscaffold_5G00339850 Rroxscaffold_6G00418020 Rroxscaffold_7G00175880
rosa_rugosa	Rorug01G0017700 Rorug05G0318400 Rorug07G0300800
rosa_samantha	Rh1CG004700 Rh1CG043500 Rh1DG112600 Rh1DG195700 Rh2AG218100 Rh2AG300700 Rh2AG454300 Rh2AG454400 Rh2AG459600 Rh2AG581500 Rh2BG119400 Rh2BG123700 Rh2BG174600 Rh2BG524000 Rh2CG125300 Rh2CG441400 Rh2CG441500 Rh2DG120900 Rh2DG125900 Rh2DG297900 Rh2DG324900 Rh2DG339600 Rh3AG238400 Rh3BG207600 Rh5AG278100 Rh5AG507700 Rh5BG529200 Rh5CG324500 Rh7BG426800 Rh7BG450300
rosa_wichuraiana	Rw5G015030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	332, 343
AluBI	AGCT	3 cut(s)	89, 96, 321
AluI	AGCT	3 cut(s)	89, 96, 321
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	2 cut(s)	323, 377
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	126, 302
BalI	TGGCCA	1 cut(s)	325
BbsI	GAAGAC	2 cut(s)	13, 95
BbvI	GCAGC	1 cut(s)	208
BciVI	GTATCC	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	343
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	2 cut(s)	13, 95
BpmI	CTGGAG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	208
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	325, 379
BsmAI	GTCTC	1 cut(s)	445
BsmI	GAATGC	3 cut(s)	312, 395, 436
BsnI	GGCC	2 cut(s)	325, 379
Bso31I	GGTCTC	1 cut(s)	445
Bsp143I	GATC	1 cut(s)	292
BspANI	GGCC	2 cut(s)	325, 379
BspCNI	CTCAG	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	287
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	32, 346
BstC8I	GCNNGC	3 cut(s)	323, 436, 440
BstDEI	CTNAG	2 cut(s)	408, 426
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	2 cut(s)	13, 95
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	325, 379
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	3 cut(s)	323, 436, 440
CfoI	GCGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	331, 342
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	89, 96, 250, 321, 325, 379, 442
CviKI_1	RGCY	7 cut(s)	89, 96, 250, 321, 325, 379, 442
CviQI	GTAC	2 cut(s)	331, 342
DdeI	CTNAG	2 cut(s)	408, 426
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	412
FaeI	CATG	1 cut(s)	263
FaiI	YATR	8 cut(s)	109, 122, 173, 261, 273, 288, 350, 419
FatI	CATG	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	222
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	325, 379
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	6, 185
HphI	GGTGA	2 cut(s)	126, 302
Hpy166II	GTNNAC	2 cut(s)	56, 423
Hpy188I	TCNGA	2 cut(s)	36, 401
Hpy188III	TCNNGA	2 cut(s)	10, 182
Hpy8I	GTNNAC	2 cut(s)	56, 423
HpyCH4III	ACNGT	2 cut(s)	32, 346
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	146, 224, 395, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	2 cut(s)	408, 426
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	2 cut(s)	86, 214
LpnPI	CCDG	3 cut(s)	162, 307, 322
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	361
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	13, 95
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	5 cut(s)	48, 59, 213, 370, 412
MluNI	TGGCCA	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	3 cut(s)	257, 321, 369
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	2 cut(s)	255, 457
MslI	CAYNNNNRTG	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	325
Mva1269I	GAATGC	3 cut(s)	312, 395, 436
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	157
PctI	GAATGC	3 cut(s)	312, 395, 436
PfeI	GAWTC	2 cut(s)	6, 185
PkrI	GCNGC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	332, 343
RsaNI	GTAC	2 cut(s)	331, 342
RseI	CAYNNNNRTG	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	255, 457
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	343
SetI	ASST	7 cut(s)	91, 98, 151, 168, 323, 364, 457
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	193
Sse9I	AATT	5 cut(s)	48, 59, 213, 370, 412
TaaI	ACNGT	2 cut(s)	32, 346
TaiI	ACGT	1 cut(s)	364
TasI	AATT	5 cut(s)	48, 59, 213, 370, 412
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	2 cut(s)	6, 185
Tru1I	TTAA	2 cut(s)	255, 457
Tru9I	TTAA	2 cut(s)	255, 457
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	177
XapI	RAATTY	1 cut(s)	412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XmiI	GTMKAC	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.