Rh1CG043500

Intron-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001543
Physical Location & Seq
Reverse (-)
8131246 .. 8140296
9051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG043500.1

Sequence Viewer

Length: 875 bp
ATGACGAAGGTCTACGGAACAGGCGCGTACGATTTCAAGCGCCACCATGTTGCCGAGTACCCGGTGGAGCTGAACCACCAGCTCGGAGAGAAGCCGGTGGAGGCTAAACCCGGTGCGGCGCTGCCGAGCTCGATAACGCTGTCGGAGATTCAGAGGGACCAGCTCACTATGATTGCCGCTGCCAATTGGTCCAAAGCCGGCGGCGACGCCGTGCAGGTGAAGAAGGCGTTCGACACGGAGCTGGTGAAGAAGATTTACGAGACGGAGTTGTGTGTGAAGGAGGGGCAGAGGAAGACGGTGCCGTTGCAGAGACTGATGATTTTGGAGGTCAGCCAGTATTTGGAGAACTATCTCTTTCCCAATTTCGATCCCGAAACGGCGTCGTTCGAGCACGTTATATCCATGATTCTCATGGTCAATGAGAAGTTTCGAGAGAATGTGGCAGCTTGGGTATGCTTTCATGACCGGAAAGATGCGTTTAAAGGATTCCTTGGAAGGGTTCTTCGCCTTAAATCGAAATCGAACACGGGCTCATCGATTCGTATCTCGACAAGTGGTACTCCTCTCGACTCAGTACTGTGCGCGAAATTGAAAAGCTTGACCATGGTGGTTTCCGATTCTTCTCGCTCTGATGCAGATAAAGATTTTGCTCGGGGAAATTGTTATAACCCAGAAGTTATTAGCACTACAAAATTCAGGGATGCAGTTGCAAATGACGTCTTAATGAAAGAAGAGAGAATTGAAATCGACAGAAAGAGTGTAGACAGGTCTCAATTTCCGTTGTTTCCAGCTTGGAGGCATAAAAGTTTTGTCTCTCAGATTGTATCTGAATTGCAAAGCTGTGATTTTTGGTGTGGGTGGAGGCTTTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
AAA_11 AAA_12 Aquarius_N

Protein Analysis

291

Amino Acids

32.98

Weight (kDa)

8.43

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aquarius_N_1st PF16399 55 - 182 2.3e-34 Intron-binding protein aquarius N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 1 cut(s) 205
AatII GACGTC 1 cut(s) 720
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 298
AccB7I CCANNNNNTGG 1 cut(s) 340
AccI GTMKAC 2 cut(s) 12, 762
AccII CGCG 2 cut(s) 26, 584
AciI CCGC 3 cut(s) 116, 177, 201
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 692
AcyI GRCGYC 3 cut(s) 207, 380, 717
AfaI GTAC 4 cut(s) 29, 59, 559, 576
AfiI CCNNNNNNNGG 2 cut(s) 340, 496
AgsI TTSAA 3 cut(s) 37, 592, 743
AluBI AGCT 9 cut(s) 70, 82, 129, 163, 241, 446, 597, 791, 840
AluI AGCT 9 cut(s) 70, 82, 129, 163, 241, 446, 597, 791, 840
Alw21I GWGCWC 2 cut(s) 131, 393
Alw26I GTCTC 4 cut(s) 254, 304, 774, 817
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 651
ApeKI GCWGC 3 cut(s) 121, 179, 443
ApoI RAATTY 1 cut(s) 692
Asp700I GAANNNNTTC 1 cut(s) 227
AspLEI GCGC 4 cut(s) 26, 42, 121, 584
AspS9I GGNCC 2 cut(s) 157, 189
AsuC2I CCSGG 2 cut(s) 62, 111
AsuHPI GGTGA 2 cut(s) 229, 256
AvaI CYCGRG 1 cut(s) 651
AvaII GGWCC 2 cut(s) 157, 189
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 131, 533
BarI GAAGNNNNNNTAC 2 cut(s) 239, 271
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 131, 393
BbvI GCAGC 3 cut(s) 108, 166, 455
BceAI ACGGC 3 cut(s) 194, 286, 393
BcnI CCSGG 2 cut(s) 62, 111
BcoDI GTCTC 4 cut(s) 254, 304, 774, 817
BfoI RGCGCY 2 cut(s) 43, 122
BfuAI ACCTGC 1 cut(s) 205
BisI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 444
BlsI GCNGC 6 cut(s) 118, 123, 178, 181, 203, 445
BmcAI AGTACT 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 62, 111
Bme18I GGWCC 2 cut(s) 157, 189
BmeT110I CYCGRG 1 cut(s) 651
BmgT120I GGNCC 2 cut(s) 157, 189
BmiI GGNNCC 2 cut(s) 158, 300
BmrFI CCNGG 2 cut(s) 62, 111
BmsI GCATC 3 cut(s) 463, 622, 691
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 62, 111
Bsa29I ATCGAT 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 542
BsaHI GRCGYC 3 cut(s) 207, 380, 717
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 2 cut(s) 490, 603
BsaWI WCCGGW 1 cut(s) 465
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 496
Bse118I RCCGGY 2 cut(s) 94, 197
Bse1I ACTGG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 542
BseCI ATCGAT 1 cut(s) 536
BseDI CCNNGG 2 cut(s) 490, 603
BseGI GGATG 1 cut(s) 706
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 2 cut(s) 340, 496
BseMII CTCAG 2 cut(s) 585, 830
BseNI ACTGG 1 cut(s) 334
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 3 cut(s) 108, 166, 455
BsgI GTGCAG 1 cut(s) 233
Bsh1236I CGCG 2 cut(s) 26, 584
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 131, 393
BsiHKCI CYCGRG 1 cut(s) 651
BsiSI CCGG 5 cut(s) 62, 95, 111, 198, 466
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 340, 496
BsmAI GTCTC 4 cut(s) 254, 304, 774, 817
BsmBI CGTCTC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 774
BsoBI CYCGRG 1 cut(s) 651
Bsp1286I GDGCHC 3 cut(s) 131, 393, 533
Bsp143I GATC 1 cut(s) 367
Bsp19I CCATGG 1 cut(s) 603
BspACI CCGC 3 cut(s) 116, 177, 201
BspCNI CTCAG 2 cut(s) 584, 829
BspDI ATCGAT 1 cut(s) 536
BspFNI CGCG 2 cut(s) 26, 584
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 158, 300
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 774
BsrFI RCCGGY 2 cut(s) 94, 197
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 2 cut(s) 94, 197
BssECI CCNNGG 2 cut(s) 490, 603
BssMI GATC 1 cut(s) 367
BssNI GRCGYC 3 cut(s) 207, 380, 717
BssT1I CCWWGG 2 cut(s) 490, 603
Bst4CI ACNGT 2 cut(s) 298, 579
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 3 cut(s) 207, 380, 717
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 571, 816
BstDSI CCRYGG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 2 cut(s) 26, 584
BstH2I RGCGCY 2 cut(s) 43, 122
BstHHI GCGC 4 cut(s) 26, 42, 121, 584
BstKTI GATC 1 cut(s) 370
BstMAI GTCTC 4 cut(s) 254, 304, 774, 817
BstMBI GATC 1 cut(s) 367
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 60, 109
BstUI CGCG 2 cut(s) 26, 584
BstV1I GCAGC 3 cut(s) 108, 166, 455
BstV2I GAAGAC 1 cut(s) 299
Bsu15I ATCGAT 1 cut(s) 536
BsuTUI ATCGAT 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 603
BtsCI GGATG 1 cut(s) 706
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 1 cut(s) 199
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 460
CfoI GCGC 4 cut(s) 26, 42, 121, 584
Cfr10I RCCGGY 2 cut(s) 94, 197
Cfr13I GGNCC 2 cut(s) 157, 189
ClaI ATCGAT 1 cut(s) 536
CseI GACGC 2 cut(s) 215, 369
Csp6I GTAC 4 cut(s) 28, 58, 558, 575
CviAII CATG 5 cut(s) 47, 403, 412, 461, 604
CviQI GTAC 4 cut(s) 28, 58, 558, 575
DdeI CTNAG 2 cut(s) 571, 816
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
DraI TTTAAA 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 490, 603
Eco24I GRGCYC 2 cut(s) 131, 533
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 2 cut(s) 157, 189
Eco53kI GAGCTC 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 490, 603
EcoT38I GRGCYC 2 cut(s) 131, 533
ErhI CCWWGG 2 cut(s) 490, 603
Esp3I CGTCTC 1 cut(s) 254
FaeI CATG 5 cut(s) 50, 406, 415, 464, 607
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 46, 402, 411, 460, 603
FblI GTMKAC 2 cut(s) 12, 762
Fnu4HI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 444
FokI GGATG 1 cut(s) 713
FriOI GRGCYC 2 cut(s) 131, 533
Fsp4HI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 444
GlaI GCGC 4 cut(s) 25, 41, 120, 583
GluI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 444
HaeII RGCGCY 2 cut(s) 43, 122
HapII CCGG 5 cut(s) 62, 95, 111, 198, 466
HgaI GACGC 2 cut(s) 215, 369
HhaI GCGC 4 cut(s) 26, 42, 121, 584
Hin1I GRCGYC 3 cut(s) 207, 380, 717
Hin1II CATG 5 cut(s) 50, 406, 415, 464, 607
Hin6I GCGC 4 cut(s) 24, 40, 119, 582
HinP1I GCGC 4 cut(s) 24, 40, 119, 582
HindIII AAGCTT 1 cut(s) 595
HinfI GANTC 6 cut(s) 148, 406, 486, 538, 569, 617
HpaII CCGG 5 cut(s) 62, 95, 111, 198, 466
HphI GGTGA 2 cut(s) 229, 256
Hpy166II GTNNAC 2 cut(s) 13, 763
Hpy188I TCNGA 7 cut(s) 86, 145, 153, 616, 631, 819, 829
Hpy188III TCNNGA 5 cut(s) 371, 431, 461, 547, 566
Hpy8I GTNNAC 2 cut(s) 13, 763
Hpy99I CGWCG 2 cut(s) 209, 385
HpyAV CCTTC 3 cut(s) 217, 271, 489
HpyCH4III ACNGT 2 cut(s) 298, 579
HpyCH4IV ACGT 2 cut(s) 393, 717
HpyCH4V TGCA 6 cut(s) 214, 307, 635, 704, 710, 835
HpyF3I CTNAG 2 cut(s) 571, 816
HpySE526I ACGT 2 cut(s) 393, 717
Hsp92I GRCGYC 3 cut(s) 207, 380, 717
Hsp92II CATG 5 cut(s) 50, 406, 415, 464, 607
HspAI GCGC 4 cut(s) 24, 40, 119, 582
KroI GCCGGC 1 cut(s) 197
KroNI GCCGGC 1 cut(s) 199
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 67, 238
Lsp1109I GCAGC 3 cut(s) 108, 166, 455
LweI GCATC 3 cut(s) 463, 622, 691
MaeII ACGT 2 cut(s) 393, 717
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 7 cut(s) 232, 259, 262, 304, 494, 612, 743
MfeI CAATTG 1 cut(s) 184
MhlI GDGCHC 3 cut(s) 131, 393, 533
MluCI AATT 8 cut(s) 184, 361, 587, 658, 692, 738, 773, 830
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 94, 147, 274, 282, 319, 573, 789, 855
MroNI GCCGGC 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 3 cut(s) 480, 510, 722
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 5 cut(s) 62, 95, 111, 198, 466
MspR9I CCNGG 2 cut(s) 62, 111
MunI CAATTG 1 cut(s) 184
MvnI CGCG 2 cut(s) 26, 584
NaeI GCCGGC 1 cut(s) 199
NciI CCSGG 2 cut(s) 62, 111
NcoI CCATGG 1 cut(s) 603
NdeII GATC 1 cut(s) 367
NgoMIV GCCGGC 1 cut(s) 197
NlaIII CATG 5 cut(s) 50, 406, 415, 464, 607
NlaIV GGNNCC 2 cut(s) 158, 300
NmeAIII GCCGAG 2 cut(s) 79, 150
PagI TCATGA 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PdiI GCCGGC 1 cut(s) 199
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 5 cut(s) 148, 406, 486, 538, 617
Pfl23II CGTACG 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 6 cut(s) 118, 123, 178, 181, 203, 445
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
PshAI GACNNNNGTC 1 cut(s) 8
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 131
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 158, 300
PspPI GGNCC 2 cut(s) 157, 189
PstNI CAGNNNCTG 1 cut(s) 313
RsaI GTAC 4 cut(s) 29, 59, 559, 576
RsaNI GTAC 4 cut(s) 28, 58, 558, 575
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 3 cut(s) 480, 510, 722
SatI GCNGC 6 cut(s) 117, 122, 177, 180, 202, 444
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 2 cut(s) 157, 189
ScaI AGTACT 1 cut(s) 576
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 2 cut(s) 62, 111
SduI GDGCHC 3 cut(s) 131, 393, 533
SfaNI GCATC 3 cut(s) 463, 622, 691
SinI GGWCC 2 cut(s) 157, 189
Sse9I AATT 8 cut(s) 184, 361, 587, 658, 692, 738, 773, 830
SsiI CCGC 3 cut(s) 116, 177, 201
SstI GAGCTC 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 60, 109
StyI CCWWGG 2 cut(s) 490, 603
TaaI ACNGT 2 cut(s) 298, 579
TaiI ACGT 2 cut(s) 396, 720
TasI AATT 8 cut(s) 184, 361, 587, 658, 692, 738, 773, 830
TatI WGTACW 1 cut(s) 574
TauI GCSGC 3 cut(s) 119, 179, 204
TfiI GAWTC 5 cut(s) 148, 406, 486, 538, 617
Tru1I TTAA 3 cut(s) 480, 510, 722
Tru9I TTAA 3 cut(s) 480, 510, 722
TseI GCWGC 3 cut(s) 121, 179, 443
TspDTI ATGAA 2 cut(s) 449, 740
TspGWI ACGGA 4 cut(s) 30, 251, 278, 768
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 157, 189
XapI RAATTY 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 2 cut(s) 12, 762
XmnI GAANNNNTTC 1 cut(s) 227
ZraI GACGTC 1 cut(s) 718
ZrmI AGTACT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.