Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000279.1

Orthogroup ID

OG0001780

Physical Location & Seq

Genomic Coordinates Reverse (-)

26713 .. 29521

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgaaagccaatagttggaaaactaatgctagggtggaccagcagaggccaatagttgaaagtagcatggacagaaaacacgagttctattcatctaagcaaaatgatgattttgcagctttggaacagggttggcttgccttcaaagaaactttccttgcaatcgtggccctggaatctgtaaattataattttgggattaattgtggaggacctgagattacgtcttcgtctgatgggattgtgtatgagaaggaaaatgagccccttggaccagcttcatattttgtggctggcacaaccagatggggagttagcaatgtcggatatttcgctggcagaaccaatgctctgtatacaagtttctccttatctcaattcacaaatacttttgattctgtgctattccagactgcaaggttctctgcttcatcaattagatactttggcttagggcttgagaatggtaactacaccgtgaacctcaagtttgcagaacatgtcattctggctgctactactgggaaatttcttgggagacgtctttttgatatttatatccaggtcttagacttgaaacaatattttgattatgcagatagatttgctgtagaccccaatggtggtattcctaataatcatcaaccgaatgggccttctgaagtatgcgaaccaacagagagtcctctacgttatggaatttgtgatgattgtatcaaccaccacctttcaagtggccatgctggtcatagtaatgaggtttcagttccagccgaaaacctgggaattcctagcgctgatgttaatgccattcccagtgatttcataattcctcttaccggtttcgatagtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

285

Amino Acids

31.4

Weight (kDa)

4.96

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	65 - 189	2.1e-20	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001780)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13490
malus_domestica	MD04G1065100.v1.1 MD13G1167400.v1.1 MD15G1349300.v1.1 MD16G1167800.v1.1 MD17G1282000.v1.1
prunus_persica	Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1 Prupe.1G134800_v2.0.a1
pyrus_communis	pycom13g14310 pycom16g14140
rosa_chinensis	RchiOBHm_Chr4g0422741 RchiOBHm_Chr7g0217821
rosa_multiflora	Rmu_sc0000148.1_g000034 Rmu_sc0000279.1_g000006 Rmu_sc0024030.1_g000007
rosa_roxburghii	Rroxscaffold_5G00364630
rosa_rugosa	Rorug03G0187100 Rorug04G0181200 Rorug04G0181200 Rorug04G0181300 Rorug04G0181300 Rorug05G0456000 Rorug05G0495600
rosa_samantha	Rh2AG094300 Rh2AG227700 Rh2AG249200 Rh2AG249700 Rh2CG309900 Rh2DG285800 Rh2DG391200 Rh2DG399500 Rh3AG163000 Rh3CG178400 Rh3DG040700 Rh4AG241600 Rh4BG245000 Rh4BG245100 Rh4CG177600 Rh4CG255000 Rh4CG255600 Rh4DG239500 Rh6AG317700 Rh6DG255100 Rh6DG351700 Rh7BG360400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	544
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	2 cut(s)	356, 612
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	3 cut(s)	527, 699, 786
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	541
AfeI	AGCGCT	1 cut(s)	796
AfiI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
AflIII	ACRYGT	1 cut(s)	499
AgeI	ACCGGT	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	59, 145, 577, 732
AjnI	CCWGG	3 cut(s)	171, 561, 780
AluBI	AGCT	2 cut(s)	119, 278
AluI	AGCT	2 cut(s)	119, 278
Alw26I	GTCTC	1 cut(s)	532
Aor51HI	AGCGCT	1 cut(s)	796
AoxI	GGCC	4 cut(s)	47, 168, 653, 736
ApeKI	GCWGC	2 cut(s)	116, 512
ApoI	RAATTY	3 cut(s)	527, 699, 786
AseI	ATTAAT	1 cut(s)	201
AsiGI	ACCGGT	1 cut(s)	839
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
AvaII	GGWCC	3 cut(s)	37, 212, 272
BalI	TGGCCA	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	128, 499
BccI	CCATC	2 cut(s)	230, 300
BciT130I	CCWGG	3 cut(s)	173, 563, 782
BcoDI	GTCTC	1 cut(s)	532
BfaI	CTAG	2 cut(s)	30, 792
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	798
BisI	GCNGC	2 cut(s)	117, 513
BlsI	GCNGC	2 cut(s)	118, 514
Bme1390I	CCNGG	3 cut(s)	173, 563, 782
Bme18I	GGWCC	3 cut(s)	37, 212, 272
BmgT120I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
BmrFI	CCNGG	3 cut(s)	173, 563, 782
BmrI	ACTGGG	2 cut(s)	531, 810
BmuI	ACTGGG	2 cut(s)	531, 810
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	451
BpuEI	CTTGAG	2 cut(s)	470, 479
BsaHI	GRCGYC	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	171, 268, 781
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 623, 839
Bse118I	RCCGGY	1 cut(s)	839
Bse1I	ACTGG	2 cut(s)	526, 816
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	173, 563, 782
BseDI	CCNNGG	3 cut(s)	171, 268, 781
BseLI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	526, 816
BseXI	GCAGC	2 cut(s)	128, 499
BshFI	GGCC	4 cut(s)	49, 170, 655, 738
BshTI	ACCGGT	1 cut(s)	839
BsiSI	CCGG	1 cut(s)	840
BslI	CCNNNNNNNGG	3 cut(s)	15, 623, 839
BsmAI	GTCTC	1 cut(s)	532
BsmBI	CGTCTC	1 cut(s)	532
BsnI	GGCC	4 cut(s)	49, 170, 655, 738
Bsp1286I	GDGCHC	1 cut(s)	267
BspANI	GGCC	4 cut(s)	49, 170, 655, 738
BspCNI	CTCAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	526, 816
BssAI	RCCGGY	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	171, 268, 781
BssNAI	GTATAC	1 cut(s)	357
BssNI	GRCGYC	1 cut(s)	541
BssSI	CACGAG	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	268
Bst1107I	GTATAC	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	3 cut(s)	173, 563, 782
Bst4CI	ACNGT	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	138, 295, 337
BstDEI	CTNAG	4 cut(s)	96, 216, 451, 568
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstMAI	GTCTC	1 cut(s)	532
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	3 cut(s)	173, 563, 782
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	3 cut(s)	171, 561, 780
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	2 cut(s)	128, 499
BstV2I	GAAGAC	1 cut(s)	219
BstZ17I	GTATAC	1 cut(s)	357
BsuRI	GGCC	4 cut(s)	49, 170, 655, 738
BtsIMutI	CAGTG	1 cut(s)	823
Cac8I	GCNNGC	3 cut(s)	138, 295, 337
CfoI	GCGC	1 cut(s)	797
Cfr10I	RCCGGY	1 cut(s)	839
Cfr13I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
CspAI	ACCGGT	1 cut(s)	839
CviAII	CATG	3 cut(s)	67, 500, 740
DdeI	CTNAG	4 cut(s)	96, 216, 451, 568
EaeI	YGGCCR	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	37, 212, 272
Eco47III	AGCGCT	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	681
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	786
EcoRII	CCWGG	3 cut(s)	171, 561, 780
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	532
FaeI	CATG	3 cut(s)	70, 503, 743
FatI	CATG	3 cut(s)	66, 499, 739
FblI	GTMKAC	2 cut(s)	356, 612
Fnu4HI	GCNGC	2 cut(s)	117, 513
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	117, 513
FspBI	CTAG	2 cut(s)	30, 792
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	2 cut(s)	117, 513
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	4 cut(s)	49, 170, 655, 738
HapII	CCGG	1 cut(s)	840
HhaI	GCGC	1 cut(s)	797
Hin1I	GRCGYC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	70, 503, 743
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HinfI	GANTC	3 cut(s)	176, 395, 682
HpaII	CCGG	1 cut(s)	840
Hpy166II	GTNNAC	4 cut(s)	37, 357, 481, 613
Hpy188I	TCNGA	3 cut(s)	235, 326, 661
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	4 cut(s)	37, 357, 481, 613
HpyAV	CCTTC	3 cut(s)	151, 247, 666
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	3 cut(s)	224, 541, 691
HpyCH4V	TGCA	5 cut(s)	116, 161, 416, 494, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	4 cut(s)	96, 216, 451, 568
HpySE526I	ACGT	3 cut(s)	224, 541, 691
Hsp92I	GRCGYC	1 cut(s)	541
Hsp92II	CATG	3 cut(s)	70, 503, 743
HspAI	GCGC	1 cut(s)	795
Lsp1109I	GCAGC	2 cut(s)	128, 499
MaeI	CTAG	2 cut(s)	30, 792
MaeII	ACGT	3 cut(s)	224, 541, 691
MaeIII	GTNAC	1 cut(s)	467
MboII	GAAGA	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
MluNI	TGGCCA	1 cut(s)	738
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	6 cut(s)	39, 203, 494, 696, 751, 843
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	2 cut(s)	201, 804
MslI	CAYNNNNRTG	1 cut(s)	753
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	3 cut(s)	173, 563, 782
MvaI	CCWGG	3 cut(s)	173, 563, 782
MwoI	GCNNNNNNNGC	1 cut(s)	167
NlaIII	CATG	3 cut(s)	70, 503, 743
NspI	RCATGY	1 cut(s)	503
PciI	ACATGT	1 cut(s)	499
PfeI	GAWTC	2 cut(s)	176, 395
PflMI	CCANNNNNTGG	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	118, 514
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	3 cut(s)	171, 561, 780
PspGI	CCWGG	3 cut(s)	171, 561, 780
PspPI	GGNCC	5 cut(s)	37, 169, 212, 272, 653
PspPPI	RGGWCCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	201, 804
SatI	GCNGC	2 cut(s)	117, 513
Sau96I	GGNCC	5 cut(s)	37, 169, 212, 272, 653
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	3 cut(s)	173, 563, 782
SduI	GDGCHC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	3 cut(s)	37, 212, 272
SmiMI	CAYNNNNRTG	1 cut(s)	753
SmlI	CTYRAG	2 cut(s)	458, 485
SmoI	CTYRAG	2 cut(s)	458, 485
Sse9I	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	30, 792
StyD4I	CCNGG	3 cut(s)	171, 561, 780
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	3 cut(s)	227, 544, 694
TaqI	TCGA	1 cut(s)	846
TasI	AATT	9 cut(s)	184, 190, 202, 377, 435, 527, 699, 786, 828
TfiI	GAWTC	2 cut(s)	176, 395
Tru1I	TTAA	2 cut(s)	201, 804
Tru9I	TTAA	2 cut(s)	201, 804
TscAI	CASTG	1 cut(s)	823
TseI	GCWGC	2 cut(s)	116, 512
TspDTI	ATGAA	5 cut(s)	17, 81, 270, 420, 814
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	3 cut(s)	37, 212, 272
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	3 cut(s)	527, 699, 786
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	731
XmiI	GTMKAC	2 cut(s)	356, 612
XspI	CTAG	2 cut(s)	30, 792
ZraI	GACGTC	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.