Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003765.1

Orthogroup ID

OG0002287

Physical Location & Seq

Genomic Coordinates Forward (+)

177645 .. 179353

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgtgcattggagtgattggaccaatcaaatcccaagctcagtgggggactcttgcatctgatgaagtggaagcccttggtgaaattgctacacaactgaataaaaagaactggaatttgagtgacccatgtagcaatattccaactttctcaatcccacatacggatcagtaccataacaccctcttctgcaactgtcatttccctggcaatgcgtgccatgtcgaaaccatttttcttgttggtcaggacctggatggtgtgcttccaccatcactggtgaagctaccttaccttaaggaactaaatttgggtcagaattatctcagtggttcaattccacctgaatggggttcttccaagttggaatttctatactatggtttcagggccttggaaagcaacttattttctggaactgttcccccggacatcggtagattgattaacatggaagttctctaccttcgagcaaacaatctcactggagagttgcctgtggctcttactaatttgaccaagctaaaaaaactttggattgggagtaacaacttcattggaagaatacccaattattttcctagttggaaagaacttgagcagctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

5.54

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	150 - 191	7e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44740
fragaria_vesca	FvH4_3g06831 FvH4_3g06840 FvH4_3g06950 FvH4_4g01471
malus_domestica	MD05G1294400.v1.1 MD05G1295000.v1.1 MD10G1272400.v1.1
pyrus_communis	pycom10g22810
rosa_chinensis	RchiOBHm_Chr5g0012131 RchiOBHm_Chr5g0012231 RchiOBHm_Chr5g0034061 RchiOBHm_Chr5g0034101
rosa_laevigata	RLG00000031894
rosa_multiflora	Rmu_co8169922.1_g000001 Rmu_co8436183.1_g000001 Rmu_sc0003765.1_g000050 Rmu_sc0008482.1_g000003 Rmu_sc0029802.1_g000001 Rmu_ssc0000128.1_g000006 Rmu_ssc0000217.1_g000016 Rmu_ssc0000217.1_g000036
rosa_roxburghii	Rroxscaffold_1G00046150 Rroxscaffold_1G00064450 Rroxscaffold_4G00315760
rosa_samantha	Rh5BG089500 Rh5BG089600 Rh5BG089700 Rh5BG089800 Rh5BG090000 Rh5BG090100 Rh5BG090200 Rh5BG090600 Rh5BG090800 Rh5BG236100 Rh5CG103400 Rh5CG103500 Rh5DG089600 Rh5DG090300 Rh7AG254500 Rh7AG386900 Rh7CG406200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	3 cut(s)	115, 307, 368
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	163, 350, 434
AflII	CTTAAG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	336
AjnI	CCWGG	2 cut(s)	205, 252
AluBI	AGCT	4 cut(s)	38, 286, 523, 604
AluI	AGCT	4 cut(s)	38, 286, 523, 604
AlwI	GGATC	1 cut(s)	174
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	3 cut(s)	115, 307, 368
AspS9I	GGNCC	3 cut(s)	20, 250, 390
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	92, 292
AvaII	GGWCC	2 cut(s)	20, 250
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BccI	CCATC	2 cut(s)	251, 280
BciT130I	CCWGG	2 cut(s)	207, 254
BcnI	CCSGG	1 cut(s)	428
BfaI	CTAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	207, 254, 428
Bme18I	GGWCC	2 cut(s)	20, 250
BmgT120I	GGNCC	3 cut(s)	20, 250, 390
BmrFI	CCNGG	3 cut(s)	207, 254, 428
BmsI	GCATC	1 cut(s)	65
BpmI	CTGGAG	1 cut(s)	507
BpuMI	CCSGG	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	76, 205, 393, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 350, 434
Bse1I	ACTGG	3 cut(s)	116, 282, 490
Bse3DI	GCAATG	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	207, 254
BseDI	CCNNGG	4 cut(s)	76, 205, 393, 426
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	3 cut(s)	163, 350, 434
BseMI	GCAATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	53, 340
BseNI	ACTGG	3 cut(s)	116, 282, 490
BshFI	GGCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	3 cut(s)	163, 350, 434
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	2 cut(s)	52, 339
BspPI	GGATC	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	217
BsrI	ACTGG	3 cut(s)	116, 282, 490
BssECI	CCNNGG	4 cut(s)	76, 205, 393, 426
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	76, 393
Bst2UI	CCWGG	2 cut(s)	207, 254
Bst4CI	ACNGT	2 cut(s)	197, 421
Bst6I	CTCTTC	1 cut(s)	191
BstAFI	CTTAAG	1 cut(s)	296
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	39, 326
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	207, 254
BstSCI	CCNGG	3 cut(s)	205, 252, 426
BstXI	CCANNNNNNTGG	1 cut(s)	348
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	1 cut(s)	262
BtsIMutI	CAGTG	4 cut(s)	47, 275, 334, 483
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	253
Cfr13I	GGNCC	3 cut(s)	20, 250, 390
Csp6I	GTAC	1 cut(s)	172
CspCI	CAANNNNNGTGG	2 cut(s)	23, 58
CviAII	CATG	3 cut(s)	129, 221, 451
CviJI	RGCY	7 cut(s)	38, 74, 286, 392, 503, 523, 604
CviKI_1	RGCY	7 cut(s)	38, 74, 286, 392, 503, 523, 604
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	39, 326
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	2 cut(s)	76, 393
Eco47I	GGWCC	2 cut(s)	20, 250
EcoO109I	RGGNCCY	2 cut(s)	250, 390
EcoRII	CCWGG	2 cut(s)	205, 252
EcoT14I	CCWWGG	2 cut(s)	76, 393
ErhI	CCWWGG	2 cut(s)	76, 393
FaeI	CATG	3 cut(s)	132, 224, 454
FaiI	YATR	7 cut(s)	130, 162, 177, 222, 376, 381, 452
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	3 cut(s)	128, 220, 450
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	1 cut(s)	428
Hin1II	CATG	3 cut(s)	132, 224, 454
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	92, 292
Hpy188I	TCNGA	2 cut(s)	61, 318
Hpy188III	TCNNGA	2 cut(s)	248, 414
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	197, 421
HpyCH4V	TGCA	3 cut(s)	6, 56, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	2 cut(s)	39, 326
Hsp92II	CATG	3 cut(s)	132, 224, 454
Kzo9I	GATC	1 cut(s)	166
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	122, 545
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	178, 348, 573
MluCI	AATT	8 cut(s)	84, 115, 307, 319, 336, 368, 511, 571
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	3 cut(s)	167, 345, 566
MnlI	CCTC	1 cut(s)	194
MseI	TTAA	2 cut(s)	297, 447
MslI	CAYNNNNRTG	2 cut(s)	11, 346
MspA1I	CMGCKG	1 cut(s)	604
MspCI	CTTAAG	1 cut(s)	296
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	207, 254, 428
MvaI	CCWGG	2 cut(s)	207, 254
MwoI	GCNNNNNNNGC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	132, 224, 454
NmuCI	GTSAC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	205, 252
PspGI	CCWGG	2 cut(s)	205, 252
PspPI	GGNCC	3 cut(s)	20, 250, 390
PspPPI	RGGWCCY	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	11, 346
SaqAI	TTAA	2 cut(s)	297, 447
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	3 cut(s)	20, 250, 390
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	3 cut(s)	207, 254, 428
SetI	ASST	9 cut(s)	40, 255, 288, 292, 297, 346, 468, 525, 606
SfaNI	GCATC	1 cut(s)	65
SinI	GGWCC	2 cut(s)	20, 250
SmiMI	CAYNNNNRTG	2 cut(s)	11, 346
SmlI	CTYRAG	2 cut(s)	296, 596
SmoI	CTYRAG	2 cut(s)	296, 596
Sse9I	AATT	8 cut(s)	84, 115, 307, 319, 336, 368, 511, 571
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	3 cut(s)	205, 252, 426
StyI	CCWWGG	2 cut(s)	76, 393
TaaI	ACNGT	2 cut(s)	197, 421
TaqI	TCGA	2 cut(s)	225, 469
TasI	AATT	8 cut(s)	84, 115, 307, 319, 336, 368, 511, 571
Tru1I	TTAA	2 cut(s)	297, 447
Tru9I	TTAA	2 cut(s)	297, 447
TscAI	CASTG	4 cut(s)	47, 282, 334, 490
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	2 cut(s)	78, 544
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	4 cut(s)	47, 282, 334, 490
Vha464I	CTTAAG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	20, 250
XapI	RAATTY	3 cut(s)	115, 307, 368
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.