Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000151.1

Orthogroup ID

OG0002265

Physical Location & Seq

Genomic Coordinates Reverse (-)

79385 .. 79975

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgccctaccagccctcaaatgggtccatcccagacccaattggagttatgaacttgccttatgttgacgagatgcaaaggttgagacacgagcttgagcaactccggaaggaaaagcaagaccgcgagacctgccgacggcaaaaactagaaaaaattctacaacttgatagcgactcgtcagatgacaacactagcggtgactatccccaaaccaacaacgtaatagcaaatgcgggtgccagtggcgtcagcgtcaccgggggagtctctgcagcgcccctcgtcgaggggatgagagatgcatggaatgggggggaaaacggcggagccagactaggccaatccaagagaacatgtaacgaatcgtggcgcgaaaagatggaaaaaatgattgctgcatgcaagcgtgccggccctcgagaactcgcggtcgaaattgcaagagatgtcggtgcgtctccattcaccaatgacatcctcaatgcggcgaaacctcgcagattcaccacccttattttccaaaagtatgatgggactactgacccggtagaccacattaaggggtacaaacagcagatgtccatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotrans_gag

Protein Analysis

196

Amino Acids

21.71

Weight (kDa)

6.75

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002265)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10223 FvH4_3g14201 FvH4_3g32051 FvH4_4g05725
rosa_laevigata	RLG00000022495
rosa_multiflora	Rmu_co8151434.1_g000001 Rmu_co8163034.1_g000001 Rmu_sc0000588.1_g000010 Rmu_sc0000939.1_g000012 Rmu_sc0001571.1_g000013 Rmu_sc0001692.1_g000034 Rmu_sc0001744.1_g000023 Rmu_sc0002161.1_g000027 Rmu_sc0002517.1_g000001 Rmu_sc0002824.1_g000013 Rmu_sc0003652.1_g000009 Rmu_sc0005120.1_g000002 Rmu_sc0005710.1_g000010 Rmu_sc0005840.1_g000020 Rmu_sc0006218.1_g000005 Rmu_sc0006266.1_g000071 Rmu_sc0008183.1_g000016 Rmu_sc0008518.1_g000005 Rmu_sc0009210.1_g000001 Rmu_sc0011809.1_g000004 Rmu_sc0013284.1_g000004 Rmu_sc0036344.1_g000002 Rmu_sc0040994.1_g000001 Rmu_ssc0000151.1_g000020 Rmu_ssc0000167.1_g000009
rosa_roxburghii	Rroxscaffold_1G00012770 Rroxscaffold_1G00014740 Rroxscaffold_3G00225770 Rroxscaffold_3G00225780 Rroxscaffold_4G00295510 Rroxscaffold_5G00373860 Rroxscaffold_5G00373870
rosa_rugosa	Rorug01G0284600
rosa_samantha	Rh3CG320700 Rh7BG220100 Rh7BG352300
rosa_wichuraiana	Rw3G025420 Rw7G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	3 cut(s)	126, 375, 431
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	6 cut(s)	124, 198, 236, 327, 431, 488
AcsI	RAATTY	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	6 cut(s)	20, 21, 138, 289, 487, 562
AflIII	ACRYGT	1 cut(s)	356
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	4 cut(s)	79, 122, 274, 465
Ama87I	CYCGRG	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	2 cut(s)	340, 415
ApeKI	GCWGC	2 cut(s)	275, 398
ApoI	RAATTY	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	280, 375
AspS9I	GGNCC	2 cut(s)	24, 416
AsuC2I	CCSGG	2 cut(s)	262, 548
AsuHPI	GGTGA	4 cut(s)	212, 250, 460, 499
AvaI	CYCGRG	1 cut(s)	420
AvaII	GGWCC	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	239
BauI	CACGAG	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	287, 385
BccI	CCATC	3 cut(s)	35, 376, 527
BceAI	ACGGC	2 cut(s)	155, 340
BcnI	CCSGG	2 cut(s)	262, 548
BcoDI	GTCTC	4 cut(s)	79, 122, 274, 465
BfaI	CTAG	4 cut(s)	149, 195, 338, 589
BfmI	CTRYAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	276, 399, 489
BlsI	GCNGC	3 cut(s)	277, 400, 490
Bme1390I	CCNGG	2 cut(s)	262, 548
Bme18I	GGWCC	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	24, 416
BmiI	GGNNCC	3 cut(s)	25, 241, 331
BmrFI	CCNGG	2 cut(s)	262, 548
BmsI	GCATC	2 cut(s)	63, 292
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	262, 548
BsaBI	GATNNNNATC	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	261
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 21, 138, 289, 487, 562
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	584
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	27, 300, 477
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	6 cut(s)	20, 21, 138, 289, 487, 562
BseNI	ACTGG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	287, 385
Bsh1236I	CGCG	3 cut(s)	126, 375, 431
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	342, 417
BshNI	GGYRCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	4 cut(s)	106, 261, 414, 548
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	6 cut(s)	20, 21, 138, 289, 487, 562
BsmAI	GTCTC	4 cut(s)	79, 122, 274, 465
BsmBI	CGTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	342, 417
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	105
BspACI	CCGC	6 cut(s)	124, 198, 236, 327, 431, 488
BspANI	GGCC	2 cut(s)	342, 417
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	3 cut(s)	126, 375, 431
BspLI	GGNNCC	3 cut(s)	25, 241, 331
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	261
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	89
Bst2BI	CACGAG	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	403, 407, 411, 415
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	27, 300, 477
BstFNI	CGCG	3 cut(s)	126, 375, 431
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	280, 375
BstMAI	GTCTC	4 cut(s)	79, 122, 274, 465
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 132
BstNSI	RCATGY	2 cut(s)	360, 405
BstSCI	CCNGG	2 cut(s)	260, 546
BstSFI	CTRYAG	1 cut(s)	273
BstUI	CGCG	3 cut(s)	126, 375, 431
BstV1I	GCAGC	2 cut(s)	287, 385
BsuRI	GGCC	2 cut(s)	342, 417
BtsCI	GGATG	3 cut(s)	27, 300, 477
BtsIMutI	CAGTG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	4 cut(s)	403, 407, 411, 415
CfoI	GCGC	2 cut(s)	280, 375
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	24, 416
CseI	GACGC	3 cut(s)	238, 244, 447
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	306, 357, 402
CviJI	RGCY	5 cut(s)	13, 94, 332, 342, 417
CviKI_1	RGCY	5 cut(s)	13, 94, 332, 342, 417
CviQI	GTAC	1 cut(s)	568
EciI	GGCGGA	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	24
Eco88I	CYCGRG	1 cut(s)	420
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	3 cut(s)	309, 360, 405
FaiI	YATR	6 cut(s)	50, 63, 307, 358, 403, 531
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	3 cut(s)	305, 356, 401
FauI	CCCGC	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	276, 399, 489
FokI	GGATG	3 cut(s)	14, 307, 464
Fsp4HI	GCNGC	3 cut(s)	276, 399, 489
FspBI	CTAG	4 cut(s)	149, 195, 338, 589
GlaI	GCGC	2 cut(s)	279, 374
GluI	GCNGC	3 cut(s)	276, 399, 489
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	342, 417
HapII	CCGG	4 cut(s)	106, 261, 414, 548
HgaI	GACGC	3 cut(s)	238, 244, 447
HhaI	GCGC	2 cut(s)	280, 375
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	309, 360, 405
Hin6I	GCGC	2 cut(s)	278, 373
HinP1I	GCGC	2 cut(s)	278, 373
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	4 cut(s)	176, 267, 365, 504
HpaII	CCGG	4 cut(s)	106, 261, 414, 548
HphI	GGTGA	4 cut(s)	212, 250, 460, 499
Hpy166II	GTNNAC	2 cut(s)	67, 553
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	2 cut(s)	106, 422
Hpy8I	GTNNAC	2 cut(s)	67, 553
Hpy99I	CGWCG	2 cut(s)	141, 290
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	6 cut(s)	76, 275, 305, 401, 405, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 132
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	309, 360, 405
HspAI	GCGC	2 cut(s)	278, 373
Kpn2I	TCCGGA	1 cut(s)	105
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	9 cut(s)	23, 45, 119, 145, 256, 274, 346, 427, 561
Lsp1109I	GCAGC	2 cut(s)	287, 385
LweI	GCATC	2 cut(s)	63, 292
MaeI	CTAG	4 cut(s)	149, 195, 338, 589
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	200, 256, 359
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	3 cut(s)	39, 156, 438
MlyI	GAGTC	2 cut(s)	170, 276
MnlI	CCTC	6 cut(s)	25, 283, 293, 429, 491, 507
Mph1103I	ATGCAT	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	105
MroNI	GCCGGC	1 cut(s)	413
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	561
MspI	CCGG	4 cut(s)	106, 261, 414, 548
MspR9I	CCNGG	2 cut(s)	262, 548
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	3 cut(s)	126, 375, 431
MwoI	GCNNNNNNNGC	2 cut(s)	10, 132
NaeI	GCCGGC	1 cut(s)	415
NciI	CCSGG	2 cut(s)	262, 548
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	3 cut(s)	309, 360, 405
NlaIV	GGNNCC	3 cut(s)	25, 241, 331
NmuCI	GTSAC	2 cut(s)	200, 256
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	2 cut(s)	360, 405
PaeI	GCATGC	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	420
PciI	ACATGT	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	365, 504
PkrI	GCNGC	3 cut(s)	277, 400, 490
PleI	GAGTC	2 cut(s)	170, 275
PpsI	GAGTC	2 cut(s)	170, 275
PscI	ACATGT	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	25, 241, 331
PspPI	GGNCC	2 cut(s)	24, 416
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	276, 399, 489
Sau96I	GGNCC	2 cut(s)	24, 416
SchI	GAGTC	2 cut(s)	170, 276
ScrFI	CCNGG	2 cut(s)	262, 548
SetI	ASST	5 cut(s)	83, 96, 134, 225, 499
SfaNI	GCATC	2 cut(s)	63, 292
SfcI	CTRYAG	1 cut(s)	273
Sfr274I	CTCGAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	24
SlaI	CTCGAG	1 cut(s)	420
SmlI	CTYRAG	2 cut(s)	95, 420
SmoI	CTYRAG	2 cut(s)	95, 420
SphI	GCATGC	1 cut(s)	405
Sse9I	AATT	3 cut(s)	39, 156, 438
SsiI	CCGC	6 cut(s)	124, 198, 236, 327, 431, 488
SspMI	CTAG	4 cut(s)	149, 195, 338, 589
StyD4I	CCNGG	2 cut(s)	260, 546
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	3 cut(s)	288, 421, 435
TasI	AATT	3 cut(s)	39, 156, 438
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	2 cut(s)	365, 504
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	2 cut(s)	200, 256
TseI	GCWGC	2 cut(s)	275, 398
Tsp45I	GTSAC	2 cut(s)	200, 256
TspDTI	ATGAA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	24
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	2 cut(s)	360, 405
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 530
XhoI	CTCGAG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	4 cut(s)	149, 195, 338, 589
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.