Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Reverse (-)

180017 .. 182749

Gene Structure 2733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01490.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAAGAAAATTGTGTTAAAGCTGGATTTGCATGACGATAGGGCAAAACAAAAGGCCCTTAAAACGGTTTCTACTCTCCCAGGAATCGATTCCATTGCAATGGACATGAAGGAGAAGAAATTGACGGTTATTGGAACCGTGGATCCGGTAAATGTAGTAAGTAAGCTAAGAAAGTATTGGCCGATGACGGATATCGTACTAGTGGGACCTGCGAAAGAGCCGGAAAAGGAGAAGAAGGAGGAGCCGAAGAAGGAAGGTGGTGGCGAGCCGCCAAAGAAAGAAGGAGAAGCTCCAAAAGAAGAAGGGAAAAAGGAAGGAGAAGCACCGAAGAAGGAAGAAGAGAAGAAAGAAGGTGGCGATAAGAAGGAAGGAGAGAAGAAAGATCAACCACAAGCGCAGCCGCAACCAGTTGTGCCGCCACCTGATCATGTGTTGGAACTTGTAAAGGCGTATAAAGCATATAATCCTCACCTAACAACGTATTACTACGCCCAAAGCATCGAAGAAAACCCTAATGCTTGCGTTATATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

177

Amino Acids

19.78

Weight (kDa)

7.66

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AciI	CCGC	3 cut(s)	269, 401, 416
AclWI	GGATC	2 cut(s)	137, 150
AcoI	YGGCCR	1 cut(s)	179
AfaI	GTAC	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	64
AhlI	ACTAGT	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	127, 159
AluBI	AGCT	3 cut(s)	22, 166, 290
AluI	AGCT	3 cut(s)	22, 166, 290
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	2 cut(s)	54, 179
ApeKI	GCWGC	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	55, 206
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	206
BamHI	GGATCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	81
BclI	TGATCA	1 cut(s)	424
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	1 cut(s)	200
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	269, 398, 401, 416
BlsI	GCNGC	4 cut(s)	270, 399, 402, 417
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	55, 206
BmiI	GGNNCC	4 cut(s)	136, 144, 207, 243
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	79, 138
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	2 cut(s)	93, 105
BseBI	CCWGG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	79, 138
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	2 cut(s)	93, 105
BseNI	ACTGG	1 cut(s)	407
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	56, 181
BshVI	ATCGAT	1 cut(s)	87
BsiSI	CCGG	2 cut(s)	146, 221
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	56, 181
Bsp143I	GATC	3 cut(s)	142, 382, 424
BspACI	CCGC	3 cut(s)	269, 401, 416
BspANI	GGCC	2 cut(s)	56, 181
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	136, 144, 207, 243
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	2 cut(s)	137, 150
BsrDI	GCAATG	2 cut(s)	93, 105
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	79, 138
BssMI	GATC	3 cut(s)	142, 382, 424
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	67, 127, 139
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	266, 520
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	397
BstKTI	GATC	3 cut(s)	145, 385, 427
BstMBI	GATC	3 cut(s)	142, 382, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 455
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	56, 181
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	266, 520
CfoI	GCGC	1 cut(s)	397
Cfr13I	GGNCC	2 cut(s)	55, 206
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	32, 106, 428
CviJI	RGCY	9 cut(s)	22, 56, 166, 181, 220, 244, 268, 290, 400
CviKI_1	RGCY	9 cut(s)	22, 56, 166, 181, 220, 244, 268, 290, 400
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	3 cut(s)	144, 384, 426
DpnII	GATC	3 cut(s)	142, 382, 424
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	206
EcoO109I	RGGNCCY	2 cut(s)	55, 206
EcoRII	CCWGG	1 cut(s)	79
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	3 cut(s)	35, 109, 431
FaiI	YATR	8 cut(s)	33, 107, 429, 453, 460, 462, 527, 529
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	3 cut(s)	31, 105, 427
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	269, 398, 401, 416
Fsp4HI	GCNGC	4 cut(s)	269, 398, 401, 416
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	4 cut(s)	269, 398, 401, 416
HaeIII	GGCC	2 cut(s)	56, 181
HapII	CCGG	2 cut(s)	146, 221
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	35, 109, 431
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HinfI	GANTC	2 cut(s)	84, 89
HpaII	CCGG	2 cut(s)	146, 221
HphI	GGTGA	1 cut(s)	461
HpyCH4III	ACNGT	3 cut(s)	67, 127, 139
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	2 cut(s)	31, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 455
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	35, 109, 431
HspAI	GCGC	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	142, 382, 424
LmnI	GCTCC	2 cut(s)	241, 295
LpnPI	CCDG	8 cut(s)	8, 66, 93, 159, 222, 234, 420, 435
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	507
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	479
MalI	GATC	3 cut(s)	144, 384, 426
MboI	GATC	3 cut(s)	142, 382, 424
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	2 cut(s)	9, 119
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	232, 477
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	17, 60
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	2 cut(s)	146, 221
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	2 cut(s)	28, 455
NdeII	GATC	3 cut(s)	142, 382, 424
NlaIII	CATG	3 cut(s)	35, 109, 431
NlaIV	GGNNCC	4 cut(s)	136, 144, 207, 243
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	84, 89
PkrI	GCNGC	4 cut(s)	270, 399, 402, 417
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	4 cut(s)	136, 144, 207, 243
PspPI	GGNCC	2 cut(s)	55, 206
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	17, 60
SatI	GCNGC	4 cut(s)	269, 398, 401, 416
Sau3AI	GATC	3 cut(s)	142, 382, 424
Sau96I	GGNCC	2 cut(s)	55, 206
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	9 cut(s)	24, 168, 211, 259, 292, 355, 424, 474, 482
SfaNI	GCATC	1 cut(s)	507
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	98
SpeI	ACTAGT	1 cut(s)	199
Sse9I	AATT	2 cut(s)	9, 119
SsiI	CCGC	3 cut(s)	269, 401, 416
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	67, 127, 139
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	87, 501
TasI	AATT	2 cut(s)	9, 119
TauI	GCSGC	3 cut(s)	271, 403, 418
TfiI	GAWTC	2 cut(s)	84, 89
Tru1I	TTAA	2 cut(s)	17, 60
Tru9I	TTAA	2 cut(s)	17, 60
TseI	GCWGC	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	17, 122
TspGWI	ACGGA	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	88
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.