MD07G1131800.v1.1

Fk506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000998
Physical Location & Seq
Reverse (-)
19058584 .. 19060817
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1131800.v1.1.491

Sequence Viewer

Length: 483 bp
ATGAAGAAGTTTGTACTGAACTTGGATTTGCCTGATGACAAAGCCAAGCAGAAGGCTCTCAAGACAGTCTCTACTGTTTCTGGCATCGATTCCATTGCCATGGACATGAAGGATAAGAAATTAACAGTGATCGGAAGCGTGGACCCAGTGACTGTAGTGAGCAAGTTGCGCAAATACTGGCAAACACATATAATCTCAGTAGGACCAGCAGTAGAGCCTAAGAAAGAGGAACCAAAGAAGGAAGAACCCAAGAAAGATGAACCAAAGAAAGAAGAAGAAAAGAAAGAAGAAGAGGCCAAGAAAGAAGAACCGAAGAAAGAAGAAGCGAAGAAGGAGGAGCCAAAGAAAGAAGAAGAGAAGAAGAAGGAGCCAGACCCCGTCTTAGAGCTCGTCAAGGCGTACAAAGCGTACAACCCCCACATGACTACATATTACTATGTGCAAGGCATGGAAGAGAATCCAAATTCTTGCGTTATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

161

Amino Acids

18.43

Weight (kDa)

7.63

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 16 - 59 1.4e-06 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 170
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 3 cut(s) 15, 401, 410
AluBI AGCT 1 cut(s) 388
AluI AGCT 1 cut(s) 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 152
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 463
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 142, 203
AvaII GGWCC 2 cut(s) 142, 203
BanII GRGCYC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 390
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 142, 203
BmgT120I GGNCC 2 cut(s) 142, 203
BmiI GGNNCC 4 cut(s) 144, 231, 339, 369
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 146, 182
Bse3DI GCAATG 1 cut(s) 93
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 99
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 146, 182
BseRI GAGGAG 1 cut(s) 350
BshFI GGCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 390
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 99
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 209
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 144, 231, 339, 369
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 146, 182
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 4 cut(s) 67, 76, 127, 154
Bst6I CTCTTC 3 cut(s) 285, 348, 447
BstDEI CTNAG 3 cut(s) 196, 219, 382
BstDSI CCRYGG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 3 cut(s) 168, 404, 477
BstSFI CTRYAG 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 296
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 132, 153
CaiI CAGNNNCTG 1 cut(s) 152
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 142, 203
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 3 cut(s) 14, 400, 409
CviAII CATG 4 cut(s) 100, 106, 421, 448
CviJI RGCY 7 cut(s) 44, 56, 217, 296, 340, 370, 388
CviKI_1 RGCY 7 cut(s) 44, 56, 217, 296, 340, 370, 388
CviQI GTAC 3 cut(s) 14, 400, 409
DdeI CTNAG 3 cut(s) 196, 219, 382
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 285, 348, 447
EarI CTCTTC 3 cut(s) 285, 348, 447
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 142, 203
Eco53kI GAGCTC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 103, 109, 424, 451
FaiI YATR 8 cut(s) 101, 107, 189, 191, 422, 430, 438, 449
FatI CATG 4 cut(s) 99, 105, 420, 447
FriOI GRGCYC 1 cut(s) 390
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 296
HhaI GCGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 103, 109, 424, 451
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 89, 457
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 5 cut(s) 46, 103, 232, 325, 358
HpyCH4III ACNGT 4 cut(s) 67, 76, 127, 154
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 404, 477
HpyF3I CTNAG 3 cut(s) 196, 219, 382
Hsp92II CATG 4 cut(s) 103, 109, 424, 451
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 337, 367
LpnPI CCDG 6 cut(s) 45, 66, 159, 163, 219, 384
LweI GCATC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 2 cut(s) 119, 463
MnlI CCTC 3 cut(s) 220, 286, 328
MseI TTAA 1 cut(s) 122
MslI CAYNNNNRTG 2 cut(s) 98, 104
MwoI GCNNNNNNNGC 3 cut(s) 168, 404, 477
NcoI CCATGG 1 cut(s) 99
NdeII GATC 1 cut(s) 129
NlaIII CATG 4 cut(s) 103, 109, 424, 451
NlaIV GGNNCC 4 cut(s) 144, 231, 339, 369
NmuCI GTSAC 1 cut(s) 148
NsbI TGCGCA 1 cut(s) 170
PfeI GAWTC 2 cut(s) 89, 457
PflFI GACNNNGTC 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 390
PspN4I GGNNCC 4 cut(s) 144, 231, 339, 369
PspPI GGNCC 2 cut(s) 142, 203
PstNI CAGNNNCTG 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 377
RsaI GTAC 3 cut(s) 15, 401, 410
RsaNI GTAC 3 cut(s) 14, 400, 409
RseI CAYNNNNRTG 2 cut(s) 98, 104
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 1 cut(s) 122
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 142, 203
SduI GDGCHC 1 cut(s) 390
SetI ASST 1 cut(s) 390
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 142, 203
SmiMI CAYNNNNRTG 2 cut(s) 98, 104
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 119, 463
SstI GAGCTC 1 cut(s) 390
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 4 cut(s) 67, 76, 127, 154
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 119, 463
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 89, 457
Tru1I TTAA 1 cut(s) 122
Tru9I TTAA 1 cut(s) 122
TscAI CASTG 2 cut(s) 132, 153
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 17, 122, 273
TspRI CASTG 2 cut(s) 132, 153
Tth111I GACNNNGTC 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 142, 203
XapI RAATTY 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.