Rmu_sc0006080.1_g000011

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006080.1
OG0000998
Physical Location & Seq
Reverse (-)
50633 .. 51532
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006080.1_g000011.1.cds

Sequence Viewer

Length: 408 bp
atgaagaaggtggtactgaaacttgatttgcacgatgacaaggacaagcagaaggcgttgaaagcagtgtctggcctttctggcattgattccattgctatggacatgaaagagaggaaattaactgtgactggcaatattgatccggttgatgtggtgagcaagttgcggaaaggtaactggcacactgagattttgacagttgggccggcgaaagaagagaagaaggatgataagaaagatggagctaagaaagatgatgccaagaaagatgataacaagaagaaggacccgaatgagcaaattgctgagcttgtgcgagcctatcaaaactataatccgcagatgacgaggtactattgtgtgcagagcgcagaagagaacccaaatgcttgtgttatttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

135

Amino Acids

15.22

Weight (kDa)

8.72

Isoelectric Point (pI)

28.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 169, 341
AclWI GGATC 1 cut(s) 137
AfaI GTAC 2 cut(s) 15, 356
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 248, 313
AluI AGCT 2 cut(s) 248, 313
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 73, 206
AspLEI GCGC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 206, 289
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 289
BaeI ACNNNNGTAYC 2 cut(s) 346, 379
BccI CCATC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 206, 289
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 250
Bpu1102I GCTNAGC 1 cut(s) 309
BsaWI WCCGGW 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 136, 185
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 180, 300
BseNI ACTGG 2 cut(s) 136, 185
BsgI GTGCAG 1 cut(s) 386
BshFI GGCC 2 cut(s) 75, 208
BsiSI CCGG 2 cut(s) 146, 209
BsnI GGCC 2 cut(s) 75, 208
Bsp143I GATC 1 cut(s) 142
Bsp1720I GCTNAGC 1 cut(s) 309
BspACI CCGC 2 cut(s) 169, 341
BspANI GGCC 2 cut(s) 75, 208
BspCNI CTCAG 2 cut(s) 181, 301
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 2 cut(s) 136, 185
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 127, 202
Bst6I CTCTTC 2 cut(s) 213, 372
BstC8I GCNNGC 2 cut(s) 210, 321
BstDEI CTNAG 3 cut(s) 189, 249, 309
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 75, 208
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 186
Cac8I GCNNGC 2 cut(s) 210, 321
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 374
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 206, 289
Csp6I GTAC 2 cut(s) 14, 355
CviAII CATG 1 cut(s) 106
CviJI RGCY 5 cut(s) 75, 208, 248, 313, 323
CviKI_1 RGCY 5 cut(s) 75, 208, 248, 313, 323
CviQI GTAC 2 cut(s) 14, 355
DdeI CTNAG 3 cut(s) 189, 249, 309
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 213, 372
EarI CTCTTC 2 cut(s) 213, 372
Eco47I GGWCC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 289
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 101, 107, 336
FatI CATG 1 cut(s) 105
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 373
HaeIII GGCC 2 cut(s) 75, 208
HapII CCGG 2 cut(s) 146, 209
HhaI GCGC 1 cut(s) 374
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 146, 209
HphI GGTGA 1 cut(s) 169
HpyAV CCTTC 3 cut(s) 46, 220, 280
HpyCH4III ACNGT 2 cut(s) 127, 202
HpyCH4V TGCA 2 cut(s) 31, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
HpyF3I CTNAG 3 cut(s) 189, 249, 309
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 372
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 57, 66, 117, 159, 166, 222
LweI GCATC 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 127, 176
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 5 cut(s) 16, 230, 235, 295, 389
MluCI AATT 2 cut(s) 119, 303
MnlI CCTC 2 cut(s) 108, 345
MroNI GCCGGC 1 cut(s) 208
MseI TTAA 2 cut(s) 122, 406
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 2 cut(s) 146, 209
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NaeI GCCGGC 1 cut(s) 210
NdeII GATC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 291
NmuCI GTSAC 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 2 cut(s) 206, 289
PspPPI RGGWCCY 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 15, 356
RsaNI GTAC 2 cut(s) 14, 355
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 122, 406
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 206, 289
SetI ASST 5 cut(s) 12, 178, 250, 315, 356
SfaNI GCATC 1 cut(s) 250
SinI GGWCC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 119, 303
SsiI CCGC 2 cut(s) 169, 341
SspI AATATT 1 cut(s) 139
TaaI ACNGT 2 cut(s) 127, 202
TasI AATT 2 cut(s) 119, 303
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 122, 406
Tru9I TTAA 2 cut(s) 122, 406
TscAI CASTG 2 cut(s) 72, 193
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 17, 122
TspRI CASTG 2 cut(s) 72, 193
VpaK11BI GGWCC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.