Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003562.1

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

8362 .. 9995

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003562.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgaataatgctgctgcccaaatgataattaagtgtgccattgtgagacacacatgcatgactcttgctgttttaggcagccgcatggccggtgcgagcgcgggtgccgcaatgaaaccaagatgtaaagttgtgttgttgttggacgtacacgacgacaggtccaagaagaaagccatgagggcagtctcagggctcgaagggctagattcgatctcgatggacatgaaggacaagaagctcacggtgactggggaaatagatccagtgaacttggtgagcaagttgaggaagctatgccgcactgagatagtgtcggtaggaccagcaaaagaggaaaagaagaaggaagagccaaagaaagaggaacccaaaaagggtggggagaagaagaaagatccaaaagatgaactggctgagctaatcaaggcctacaatgcatacaacccaccaatgagtacgcattattatgtgagaagtgtggaagaggatcccaatgcctgtgtcatctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

171

Amino Acids

18.82

Weight (kDa)

9.15

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AccII	CGCG	1 cut(s)	101
AciI	CCGC	4 cut(s)	82, 101, 108, 301
AclWI	GGATC	4 cut(s)	257, 392, 485, 498
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	2 cut(s)	150, 460
AfiI	CCNNNNNNNGG	1 cut(s)	377
AhdI	GACNNNNNGTC	1 cut(s)	160
AluBI	AGCT	3 cut(s)	241, 295, 421
AluI	AGCT	3 cut(s)	241, 295, 421
Alw26I	GTCTC	2 cut(s)	40, 193
AlwI	GGATC	4 cut(s)	257, 392, 485, 498
AoxI	GGCC	2 cut(s)	87, 429
ApeKI	GCWGC	3 cut(s)	11, 14, 78
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	162, 323
AsuHPI	GGTGA	2 cut(s)	259, 289
AvaII	GGWCC	2 cut(s)	162, 323
BamHI	GGATCC	1 cut(s)	490
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	214
BcoDI	GTCTC	2 cut(s)	40, 193
BfaI	CTAG	1 cut(s)	206
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	6 cut(s)	12, 15, 79, 82, 108, 301
BlpI	GCTNAGC	1 cut(s)	417
BlsI	GCNGC	6 cut(s)	13, 16, 80, 83, 109, 302
Bme18I	GGWCC	2 cut(s)	162, 323
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	162, 323
BmiI	GGNNCC	3 cut(s)	106, 369, 492
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	417
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	89
Bse1I	ACTGG	3 cut(s)	256, 266, 417
Bse3DI	GCAATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	204, 297, 408
BseNI	ACTGG	3 cut(s)	256, 266, 417
BseXI	GCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	89, 431
BshNI	GGYRCC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	40, 193
BsnI	GGCC	2 cut(s)	89, 431
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	4 cut(s)	213, 262, 397, 490
Bsp1720I	GCTNAGC	1 cut(s)	417
BspACI	CCGC	4 cut(s)	82, 101, 108, 301
BspANI	GGCC	2 cut(s)	89, 431
BspCNI	CTCAG	3 cut(s)	203, 298, 409
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	3 cut(s)	106, 369, 492
BspPI	GGATC	4 cut(s)	257, 392, 485, 498
BspQI	GCTCTTC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	256, 266, 417
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	4 cut(s)	213, 262, 397, 490
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	345, 480
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	190, 306, 417
BstFNI	CGCG	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	4 cut(s)	216, 265, 400, 493
BstMAI	GTCTC	2 cut(s)	40, 193
BstMBI	GATC	4 cut(s)	213, 262, 397, 490
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 182, 202, 437
BstNSI	RCATGY	1 cut(s)	57
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	90
BstX2I	RGATCY	3 cut(s)	262, 397, 490
BstYI	RGATCY	3 cut(s)	262, 397, 490
BsuRI	GGCC	2 cut(s)	89, 431
BtsIMutI	CAGTG	2 cut(s)	273, 303
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	101
Cfr10I	RCCGGY	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	162, 323
Csp6I	GTAC	2 cut(s)	149, 459
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	5 cut(s)	54, 58, 85, 178, 226
CviQI	GTAC	2 cut(s)	149, 459
DdeI	CTNAG	3 cut(s)	190, 306, 417
DpnI	GATC	4 cut(s)	215, 264, 399, 492
DpnII	GATC	4 cut(s)	213, 262, 397, 490
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	345, 480
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	2 cut(s)	345, 480
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	162, 323
EcoT22I	ATGCAT	2 cut(s)	59, 442
EcoT38I	GRGCYC	1 cut(s)	198
FaeI	CATG	5 cut(s)	57, 61, 88, 181, 229
FaiI	YATR	8 cut(s)	55, 59, 86, 179, 227, 298, 442, 471
FatI	CATG	5 cut(s)	53, 57, 84, 177, 225
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	12, 15, 79, 82, 108, 301
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	6 cut(s)	12, 15, 79, 82, 108, 301
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	6 cut(s)	12, 15, 79, 82, 108, 301
HaeIII	GGCC	2 cut(s)	89, 431
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	57, 61, 88, 181, 229
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	61, 209
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	2 cut(s)	259, 289
Hpy166II	GTNNAC	2 cut(s)	151, 271
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	151, 271
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	194, 223, 340
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	57, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 182, 202, 437
HpyF3I	CTNAG	3 cut(s)	190, 306, 417
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	5 cut(s)	57, 61, 88, 181, 229
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	213, 262, 397, 490
LguI	GCTCTTC	1 cut(s)	345
LpnPI	CCDG	7 cut(s)	103, 145, 177, 237, 279, 339, 398
Lsp1109I	GCAGC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	4 cut(s)	215, 264, 399, 492
MboI	GATC	4 cut(s)	213, 262, 397, 490
MboII	GAAGA	6 cut(s)	181, 355, 362, 400, 403, 497
MflI	RGATCY	3 cut(s)	262, 397, 490
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	174, 282, 328, 358, 481
Mph1103I	ATGCAT	2 cut(s)	59, 442
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	56, 468
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	107, 182, 202, 437
NdeII	GATC	4 cut(s)	213, 262, 397, 490
NlaIII	CATG	5 cut(s)	57, 61, 88, 181, 229
NlaIV	GGNNCC	3 cut(s)	106, 369, 492
NmuCI	GTSAC	1 cut(s)	247
NsiI	ATGCAT	2 cut(s)	59, 442
NspI	RCATGY	1 cut(s)	57
PceI	AGGCCT	1 cut(s)	431
PciSI	GCTCTTC	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	6 cut(s)	13, 16, 80, 83, 109, 302
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	106, 369, 492
PspPI	GGNCC	2 cut(s)	162, 323
PsuI	RGATCY	3 cut(s)	262, 397, 490
RsaI	GTAC	2 cut(s)	150, 460
RsaNI	GTAC	2 cut(s)	149, 459
RseI	CAYNNNNRTG	2 cut(s)	56, 468
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	6 cut(s)	12, 15, 79, 82, 108, 301
Sau3AI	GATC	4 cut(s)	213, 262, 397, 490
Sau96I	GGNCC	2 cut(s)	162, 323
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	5 cut(s)	150, 164, 243, 297, 423
SinI	GGWCC	2 cut(s)	162, 323
SmiMI	CAYNNNNRTG	2 cut(s)	56, 468
Sse9I	AATT	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	4 cut(s)	82, 101, 108, 301
SspMI	CTAG	1 cut(s)	206
StuI	AGGCCT	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	198, 212, 218
TasI	AATT	1 cut(s)	27
TauI	GCSGC	3 cut(s)	84, 110, 303
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	273, 310
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	11, 14, 78
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	17, 128, 242, 423
TspRI	CASTG	2 cut(s)	273, 310
VpaK11BI	GGWCC	2 cut(s)	162, 323
XceI	RCATGY	1 cut(s)	57
XspI	CTAG	1 cut(s)	206
Zsp2I	ATGCAT	2 cut(s)	59, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.