Rh7CG167700

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000998
Physical Location & Seq
Reverse (-)
13989564 .. 13991816
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG167700.1

Sequence Viewer

Length: 348 bp
ATGTCTCTGTTTCTCCTCTGTTCTTTCTTTTTTGCAGGCATTGATTCCATTGCTATGGACATGAAAGAGAGGAAATTAACTGTGACTGGCAATATTGATCCGGTTGATGTGGTGAACAAGTTGCGGAAAGGTAACTGGCACACTGAGATTTTGACAGTTGGACCGGCGAAAGAAGAGAAGAAGGATGATAAGAAAGATGGAGCTAAGAAAGATGATGGCAAGAAGAAGGACCCGAATCAGCAAATTGCTGAGCTTGTGCGAGCCTATCAAAACTATAATCCGCAGATGACGAGGTACTATTATGTGCAGAGCGCAGAAGAGAACCCAAATGCTTGTGTTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

115

Amino Acids

13.11

Weight (kDa)

7.7

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 124, 281
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 296
AluBI AGCT 2 cut(s) 203, 253
AluI AGCT 2 cut(s) 203, 253
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 161, 229
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 2 cut(s) 161, 229
BccI CCATC 2 cut(s) 191, 209
BcoDI GTCTC 1 cut(s) 9
BlpI GCTNAGC 1 cut(s) 249
Bme18I GGWCC 2 cut(s) 161, 229
BmgT120I GGNCC 2 cut(s) 161, 229
BmiI GGNNCC 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 249
BsaWI WCCGGW 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 91, 140
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 135, 240
BseNI ACTGG 2 cut(s) 91, 140
BseRI GAGGAG 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 326
BsiSI CCGG 2 cut(s) 101, 164
BsmAI GTCTC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 97
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 2 cut(s) 124, 281
BspCNI CTCAG 2 cut(s) 136, 241
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 91, 140
BssAI RCCGGY 1 cut(s) 163
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 82, 157
Bst6I CTCTTC 2 cut(s) 168, 312
BstC8I GCNNGC 2 cut(s) 37, 261
BstDEI CTNAG 3 cut(s) 144, 204, 249
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 37, 261
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 161, 229
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 61
CviJI RGCY 3 cut(s) 203, 253, 263
CviKI_1 RGCY 3 cut(s) 203, 253, 263
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 144, 204, 249
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 168, 312
EarI CTCTTC 2 cut(s) 168, 312
Eco47I GGWCC 2 cut(s) 161, 229
EcoO109I RGGNCCY 1 cut(s) 229
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 56, 62, 276, 303
FatI CATG 1 cut(s) 60
FokI GGATG 1 cut(s) 197
GlaI GCGC 1 cut(s) 313
HapII CCGG 2 cut(s) 101, 164
HhaI GCGC 1 cut(s) 314
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 2 cut(s) 44, 235
HpaII CCGG 2 cut(s) 101, 164
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 175, 220
HpyCH4III ACNGT 2 cut(s) 82, 157
HpyCH4V TGCA 2 cut(s) 35, 307
HpyF3I CTNAG 3 cut(s) 144, 204, 249
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 21, 72, 114, 121, 177
MaeIII GTNAC 2 cut(s) 82, 131
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 185, 190, 235, 329
MluCI AATT 2 cut(s) 74, 243
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 26, 63, 285
MseI TTAA 2 cut(s) 77, 346
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 101, 164
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 44, 235
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 161, 229
PspPPI RGGWCCY 1 cut(s) 229
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 77, 346
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 161, 229
SetI ASST 4 cut(s) 133, 205, 255, 296
SinI GGWCC 2 cut(s) 161, 229
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 2 cut(s) 74, 243
SsiI CCGC 2 cut(s) 124, 281
SspI AATATT 1 cut(s) 94
TaaI ACNGT 2 cut(s) 82, 157
TasI AATT 2 cut(s) 74, 243
TfiI GAWTC 2 cut(s) 44, 235
Tru1I TTAA 2 cut(s) 77, 346
Tru9I TTAA 2 cut(s) 77, 346
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 161, 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.