Rorug01G0408900

FK506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000998
Physical Location & Seq
Forward (+)
51478781 .. 51481195
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0408900.1

Sequence Viewer

Length: 1128 bp
ATGGAGAAGGAGCTGTTGGAGGTGTTTGACGACGTGACGAAGGCGGCCGACGCCGCGAAATCGTGCGACGGTGGCGCCGAGGAAAGTCTCTGTCTTGAGGCCTTGGACCGCCTTAATAATTTTCCCGTCTCTTATCAGCTTCTCGTCTCAACCCAAGTTGGGAAGCGTCTTAAGAATCTCACAAAACATCCTAGAAAGAAAATCCAGACTTTTGCGCTTAGCCTGATGGAATCATGGAAGCAAATTGTCATTGAGGAAACATCAAAAAACGATGTGAAGAATGGCAGGTATGAAAGAAAAGATTCGCTAAAGCGTGAGTCAAATCCCAATAGTCCCAGGCCTCAGAAGATTCAGAAAACTGCTGCTGTGAAGGTTGAGAAGGTCCCCAAGGCTGAACAGGGTGACATTAAGAAGGTTGATCGTGATGTTAAACCAAGCTCAGAGAAAACATATAGTTCTGAAAGTGGGACAACGGATACTAAGGTTGAAAATCATAATGTTGTCAAGATTGAGAAAGCGGATAATGTCAAGGTTGAAAAAGTAGCCAGAGAAGTGAAGAAACCTGTTTCTGGTCCCCCAAAGTTGACATCTATACCAAAGTCTAATGATCAGGCAAGGGACAGAGTAAGGGGAATGCTGCATGAGGCTTTGTCCAAGGTTTCCCAGGAGTCTGAGGCTAATGAAAGATTTGTGGATTCAGTGAATGCATGCGACCCTATTAGAGTTGCTGTTACAGTGGAGTCTGTGCTATTTGAGAACTGGGGTGGTTCCAATGGGTCCCAGAAGGCTAAGTACCGATCACTAATTTTTAACCTGAAGGACCAAAAGAACCCAGATTTTCGCAGAAAAGTTCTTCTTGGAGATGTCAAGGCAGAGAGGCTTGTAGACATGTCCACAGCTGAAATGGCAAGTGATGAGAGGCAATCAGAGAATAAAAAGCTCGAAGAAAAGGCATTGTTTGAGTGTGAGCGTGGACTTGCACAAGTGGCTTCAACTGATCAATTCAAATGTGGTCGATGTGGGAAACGCAAGACCACCTACTACCAGATGCAGACGCGGAGTGCCGATGAACCTATGACAACATATGTAACATGTGTAAACTGCAATAACCGCTGGAAGTTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

375

Amino Acids

42.38

Weight (kDa)

9.11

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med26 PF08711 33 - 83 4.6e-11 TFIIS helical bundle-like domain
TFIIS_M PF07500 202 - 322 1.4e-34 Transcription factor S-II (TFIIS), central domain
Zn_ribbon_TFIIS PF01096 335 - 373 7.5e-19 Transcription factor S-II (TFIIS)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 885
AccII CGCG 2 cut(s) 56, 1057
AciI CCGC 6 cut(s) 44, 54, 109, 518, 1057, 1111
AcoI YGGCCR 1 cut(s) 45
AcuI CTGAAG 1 cut(s) 836
AcyI GRCGYC 2 cut(s) 51, 75
AfaI GTAC 1 cut(s) 794
AfiI CCNNNNNNNGG 2 cut(s) 159, 569
AflII CTTAAG 1 cut(s) 170
AflIII ACRYGT 2 cut(s) 888, 1091
AgsI TTSAA 4 cut(s) 488, 536, 993, 1006
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 335, 663
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AluBI AGCT 5 cut(s) 13, 139, 438, 899, 940
AluI AGCT 5 cut(s) 13, 139, 438, 899, 940
Alw26I GTCTC 3 cut(s) 92, 133, 151
AoxI GGCC 3 cut(s) 45, 99, 338
ApeKI GCWGC 2 cut(s) 362, 637
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 2 cut(s) 77, 217
AspS9I GGNCC 5 cut(s) 106, 382, 572, 777, 820
AsuHPI GGTGA 1 cut(s) 413
AvaII GGWCC 5 cut(s) 106, 382, 572, 777, 820
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanI GGYRCC 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 776, 808
BbvI GCAGC 2 cut(s) 349, 624
BccI CCATC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 337, 665
BciVI GTATCC 1 cut(s) 469
BclI TGATCA 2 cut(s) 607, 997
BcoDI GTCTC 3 cut(s) 92, 133, 151
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 78
BfrI CTTAAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 276
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 4 cut(s) 45, 54, 363, 638
BlpI GCTNAGC 1 cut(s) 218
BlsI GCNGC 4 cut(s) 46, 55, 364, 639
Bme1390I CCNGG 2 cut(s) 337, 665
Bme18I GGWCC 5 cut(s) 106, 382, 572, 777, 820
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 5 cut(s) 106, 382, 572, 777, 820
BmiI GGNNCC 6 cut(s) 76, 384, 574, 769, 778, 779
BmrFI CCNGG 2 cut(s) 337, 665
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 769
Bpu1102I GCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 116
BsaHI GRCGYC 2 cut(s) 51, 75
BsaJI CCNNGG 6 cut(s) 78, 102, 335, 387, 654, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 569
Bse1I ACTGG 1 cut(s) 764
BseBI CCWGG 2 cut(s) 337, 665
BseDI CCNNGG 6 cut(s) 78, 102, 335, 387, 654, 663
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 159, 569
BseMII CTCAG 3 cut(s) 356, 453, 663
BseNI ACTGG 1 cut(s) 764
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 349, 624
Bsh1236I CGCG 2 cut(s) 56, 1057
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 47, 101, 340
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 48
BslFI GGGAC 6 cut(s) 318, 368, 481, 558, 632, 763
BslI CCNNNNNNNGG 2 cut(s) 159, 569
BsmAI GTCTC 3 cut(s) 92, 133, 151
BsmBI CGTCTC 2 cut(s) 133, 151
BsmFI GGGAC 6 cut(s) 318, 368, 481, 558, 632, 763
BsmI GAATGC 2 cut(s) 639, 709
BsnI GGCC 3 cut(s) 47, 101, 340
Bsp143I GATC 4 cut(s) 418, 607, 797, 997
Bsp1720I GCTNAGC 1 cut(s) 218
BspACI CCGC 6 cut(s) 44, 54, 109, 518, 1057, 1111
BspANI GGCC 3 cut(s) 47, 101, 340
BspCNI CTCAG 3 cut(s) 355, 452, 664
BspFNI CGCG 2 cut(s) 56, 1057
BspLI GGNNCC 6 cut(s) 76, 384, 574, 769, 778, 779
BspMI ACCTGC 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 170
BsrI ACTGG 1 cut(s) 764
BssECI CCNNGG 6 cut(s) 78, 102, 335, 387, 654, 663
BssMI GATC 4 cut(s) 418, 607, 797, 997
BssNI GRCGYC 2 cut(s) 51, 75
BssT1I CCWWGG 3 cut(s) 102, 387, 654
Bst2UI CCWGG 2 cut(s) 337, 665
Bst4CI ACNGT 2 cut(s) 71, 736
BstACI GRCGYC 2 cut(s) 51, 75
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 709
BstDEI CTNAG 6 cut(s) 218, 342, 439, 480, 672, 789
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 2 cut(s) 56, 1057
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 2 cut(s) 77, 217
BstKTI GATC 4 cut(s) 421, 610, 800, 1000
BstMAI GTCTC 3 cut(s) 92, 133, 151
BstMBI GATC 4 cut(s) 418, 607, 797, 997
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 6 cut(s) 50, 53, 72, 905, 986, 1110
BstNI CCWGG 2 cut(s) 337, 665
BstNSI RCATGY 3 cut(s) 711, 892, 1095
BstSCI CCNGG 2 cut(s) 335, 663
BstUI CGCG 2 cut(s) 56, 1057
BstV1I GCAGC 2 cut(s) 349, 624
BstZI CGGCCG 1 cut(s) 45
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 3 cut(s) 47, 101, 340
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 2 cut(s) 705, 741
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 709
CfoI GCGC 2 cut(s) 77, 217
Cfr13I GGNCC 5 cut(s) 106, 382, 572, 777, 820
CseI GACGC 3 cut(s) 59, 155, 1063
Csp6I GTAC 1 cut(s) 793
CviAII CATG 5 cut(s) 234, 641, 708, 889, 1092
CviQI GTAC 1 cut(s) 793
DdeI CTNAG 6 cut(s) 218, 342, 439, 480, 672, 789
DinI GGCGCC 1 cut(s) 76
DpnI GATC 4 cut(s) 420, 609, 799, 999
DpnII GATC 4 cut(s) 418, 607, 797, 997
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 3 cut(s) 102, 387, 654
Eco147I AGGCCT 2 cut(s) 101, 340
Eco47I GGWCC 5 cut(s) 106, 382, 572, 777, 820
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 836
EcoO109I RGGNCCY 2 cut(s) 382, 777
EcoRII CCWGG 2 cut(s) 335, 663
EcoT14I CCWWGG 3 cut(s) 102, 387, 654
EcoT22I ATGCAT 1 cut(s) 709
EgeI GGCGCC 1 cut(s) 76
EheI GGCGCC 1 cut(s) 76
ErhI CCWWGG 3 cut(s) 102, 387, 654
Esp3I CGTCTC 2 cut(s) 133, 151
FaeI CATG 5 cut(s) 237, 644, 711, 892, 1095
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 6 cut(s) 318, 368, 481, 558, 632, 763
FatI CATG 5 cut(s) 233, 640, 707, 888, 1091
FauNDI CATATG 1 cut(s) 1084
FbaI TGATCA 2 cut(s) 607, 997
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 4 cut(s) 45, 54, 363, 638
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 45, 54, 363, 638
FspBI CTAG 1 cut(s) 192
GlaI GCGC 2 cut(s) 76, 216
GluI GCNGC 4 cut(s) 45, 54, 363, 638
HaeII RGCGCY 1 cut(s) 78
HaeIII GGCC 3 cut(s) 47, 101, 340
HgaI GACGC 3 cut(s) 59, 155, 1063
HhaI GCGC 2 cut(s) 77, 217
Hin1I GRCGYC 2 cut(s) 51, 75
Hin1II CATG 5 cut(s) 237, 644, 711, 892, 1095
Hin6I GCGC 2 cut(s) 75, 215
HinP1I GCGC 2 cut(s) 75, 215
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 8 cut(s) 175, 230, 302, 317, 349, 668, 695, 740
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 5 cut(s) 585, 886, 894, 974, 1099
Hpy188I TCNGA 6 cut(s) 345, 354, 442, 460, 673, 928
Hpy188III TCNNGA 4 cut(s) 95, 205, 422, 505
Hpy8I GTNNAC 5 cut(s) 585, 886, 894, 974, 1099
Hpy99I CGWCG 3 cut(s) 35, 53, 71
HpyAV CCTTC 6 cut(s) 34, 364, 373, 406, 778, 811
HpyCH4III ACNGT 2 cut(s) 71, 736
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 5 cut(s) 640, 707, 980, 1051, 1104
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 53, 72, 905, 986, 1110
HpyF3I CTNAG 6 cut(s) 218, 342, 439, 480, 672, 789
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 2 cut(s) 51, 75
Hsp92II CATG 5 cut(s) 237, 644, 711, 892, 1095
HspAI GCGC 2 cut(s) 75, 215
KasI GGCGCC 1 cut(s) 74
KflI GGGWCCC 1 cut(s) 777
Ksp22I TGATCA 2 cut(s) 607, 997
Kzo9I GATC 4 cut(s) 418, 607, 797, 997
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 2 cut(s) 349, 624
LweI GCATC 1 cut(s) 1038
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 34, 401, 730, 1087
MalI GATC 4 cut(s) 420, 609, 799, 999
MboI GATC 4 cut(s) 418, 607, 797, 997
MboII GAAGA 5 cut(s) 289, 358, 568, 845, 956
MluCI AATT 4 cut(s) 118, 243, 804, 1001
Mly113I GGCGCC 1 cut(s) 75
MlyI GAGTC 3 cut(s) 326, 677, 749
MnlI CCTC 9 cut(s) 13, 73, 91, 247, 351, 637, 667, 870, 912
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 5 cut(s) 114, 171, 408, 429, 810
MspA1I CMGCKG 2 cut(s) 899, 1113
MspCI CTTAAG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 337, 665
Mva1269I GAATGC 2 cut(s) 639, 709
MvaI CCWGG 2 cut(s) 337, 665
MvnI CGCG 2 cut(s) 56, 1057
MwoI GCNNNNNNNGC 6 cut(s) 50, 53, 72, 905, 986, 1110
NarI GGCGCC 1 cut(s) 75
NdeI CATATG 1 cut(s) 1084
NdeII GATC 4 cut(s) 418, 607, 797, 997
NlaIII CATG 5 cut(s) 237, 644, 711, 892, 1095
NlaIV GGNNCC 6 cut(s) 76, 384, 574, 769, 778, 779
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 34, 401
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 3 cut(s) 711, 892, 1095
PaeI GCATGC 1 cut(s) 711
PceI AGGCCT 2 cut(s) 101, 340
PciI ACATGT 2 cut(s) 888, 1091
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PctI GAATGC 2 cut(s) 639, 709
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 5 cut(s) 175, 230, 302, 349, 695
PkrI GCNGC 4 cut(s) 46, 55, 364, 639
PleI GAGTC 3 cut(s) 325, 676, 748
PluTI GGCGCC 1 cut(s) 78
PpsI GAGTC 3 cut(s) 325, 676, 748
PpuMI RGGWCCY 2 cut(s) 382, 777
PscI ACATGT 2 cut(s) 888, 1091
Psp5II RGGWCCY 2 cut(s) 382, 777
Psp6I CCWGG 2 cut(s) 335, 663
PspGI CCWGG 2 cut(s) 335, 663
PspN4I GGNNCC 6 cut(s) 76, 384, 574, 769, 778, 779
PspPI GGNCC 5 cut(s) 106, 382, 572, 777, 820
PspPPI RGGWCCY 2 cut(s) 382, 777
PvuII CAGCTG 1 cut(s) 899
RsaI GTAC 1 cut(s) 794
RsaNI GTAC 1 cut(s) 793
SaqAI TTAA 5 cut(s) 114, 171, 408, 429, 810
SatI GCNGC 4 cut(s) 45, 54, 363, 638
Sau3AI GATC 4 cut(s) 418, 607, 797, 997
Sau96I GGNCC 5 cut(s) 106, 382, 572, 777, 820
SchI GAGTC 3 cut(s) 326, 677, 749
ScrFI CCNGG 2 cut(s) 337, 665
SfaNI GCATC 1 cut(s) 1038
SfoI GGCGCC 1 cut(s) 76
SinI GGWCC 5 cut(s) 106, 382, 572, 777, 820
SmlI CTYRAG 2 cut(s) 95, 170
SmoI CTYRAG 2 cut(s) 95, 170
SphI GCATGC 1 cut(s) 711
Sse9I AATT 4 cut(s) 118, 243, 804, 1001
SseBI AGGCCT 2 cut(s) 101, 340
SsiI CCGC 6 cut(s) 44, 54, 109, 518, 1057, 1111
SspDI GGCGCC 1 cut(s) 74
SspMI CTAG 1 cut(s) 192
StuI AGGCCT 2 cut(s) 101, 340
StyD4I CCNGG 2 cut(s) 335, 663
StyI CCWWGG 3 cut(s) 102, 387, 654
TaaI ACNGT 2 cut(s) 71, 736
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 942, 1015
TasI AATT 4 cut(s) 118, 243, 804, 1001
TauI GCSGC 2 cut(s) 47, 56
TfiI GAWTC 5 cut(s) 175, 230, 302, 349, 695
Tru1I TTAA 5 cut(s) 114, 171, 408, 429, 810
Tru9I TTAA 5 cut(s) 114, 171, 408, 429, 810
TscAI CASTG 2 cut(s) 705, 741
TseFI GTSAC 2 cut(s) 34, 401
TseI GCWGC 2 cut(s) 362, 637
Tsp45I GTSAC 2 cut(s) 34, 401
TspDTI ATGAA 3 cut(s) 306, 696, 1083
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 2 cut(s) 705, 741
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 5 cut(s) 106, 382, 572, 777, 820
XceI RCATGY 3 cut(s) 711, 892, 1095
XcmI CCANNNNNNNNNTGG 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 301
XspI CTAG 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.