Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004683.1

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Reverse (-)

63320 .. 64799

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004683.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaagaaggttattctgagagtggatttgcatgatgacaaagccaagcagaaggcattgaagacggtctctactctttcaggcattgattccatcgccatggacatgaaggagaagaaactaacagtgatcgggtcggtggatccagtgaatgtggtgagcaaattgcgcaagtattggccaacagatatgatctcagtagggccagcagtagagcctaagaaagaggagccaaagaaggaagaagcaaagaaagaagaaggaaagaaggaaggagaggaagcgaagaaagaaggggaagaggcgaagaaggaggaacccaagaaagaggaggagaagaaagaaggaggaggagaggaagctaagaaagaagagccaaagaaagaggaagagaagaaagaagaagagaagaagaaagaggttcctcctccagaccccgtcttagagctcgtcaaggcttacagagcatacaaccctcacatgaccacttattaccatgtgcaaagcattgaagagaatccaaatgcttgtgttatttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

180

Amino Acids

20.49

Weight (kDa)

6.1

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AclWI	GGATC	2 cut(s)	137, 150
AcoI	YGGCCR	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	61, 512
AluBI	AGCT	2 cut(s)	362, 448
AluI	AGCT	2 cut(s)	362, 448
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	137, 150
AoxI	GGCC	2 cut(s)	179, 203
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	1 cut(s)	101
BcoDI	GTCTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	144, 231, 318, 423
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	8, 210
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	6 cut(s)	242, 344, 347, 363, 366, 417
BshFI	GGCC	2 cut(s)	181, 205
BsiHKAI	GWGCWC	1 cut(s)	450
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	181, 205
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	129, 142, 192
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	2 cut(s)	181, 205
BspCNI	CTCAG	2 cut(s)	9, 209
BspLI	GGNNCC	4 cut(s)	144, 231, 318, 423
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	129, 142, 192
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	67, 127
Bst6I	CTCTTC	5 cut(s)	294, 366, 384, 399, 507
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	5 cut(s)	17, 196, 219, 363, 442
BstDSI	CCRYGG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	3 cut(s)	132, 145, 195
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	129, 142, 192
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 464
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	181, 205
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	132, 153
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	203
CviAII	CATG	5 cut(s)	32, 100, 106, 481, 497
CviJI	RGCY	9 cut(s)	44, 181, 205, 217, 232, 362, 376, 448, 458
CviKI_1	RGCY	9 cut(s)	44, 181, 205, 217, 232, 362, 376, 448, 458
DdeI	CTNAG	5 cut(s)	17, 196, 219, 363, 442
DpnI	GATC	3 cut(s)	131, 144, 194
DpnII	GATC	3 cut(s)	129, 142, 192
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	5 cut(s)	294, 366, 384, 399, 507
EarI	CTCTTC	5 cut(s)	294, 366, 384, 399, 507
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	35, 103, 109, 484, 500
FaiI	YATR	7 cut(s)	33, 101, 107, 191, 469, 482, 498
FatI	CATG	5 cut(s)	31, 99, 105, 480, 496
FriOI	GRGCYC	1 cut(s)	450
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	181, 205
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	35, 103, 109, 484, 500
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	89, 517
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	431
HpyAV	CCTTC	9 cut(s)	46, 103, 232, 254, 262, 266, 287, 304, 338
HpyCH4III	ACNGT	2 cut(s)	67, 127
HpyCH4V	TGCA	2 cut(s)	31, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 464
HpyF3I	CTNAG	5 cut(s)	17, 196, 219, 363, 442
Hsp92II	CATG	5 cut(s)	35, 103, 109, 484, 500
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	129, 142, 192
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	4 cut(s)	66, 159, 219, 444
MalI	GATC	3 cut(s)	131, 144, 194
MboI	GATC	3 cut(s)	129, 142, 192
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	1 cut(s)	164
MluNI	TGGCCA	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MslI	CAYNNNNRTG	2 cut(s)	98, 104
Msp20I	TGGCCA	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	168, 464
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	129, 142, 192
NlaIII	CATG	5 cut(s)	35, 103, 109, 484, 500
NlaIV	GGNNCC	4 cut(s)	144, 231, 318, 423
NsbI	TGCGCA	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	89, 517
PflFI	GACNNNGTC	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	450
PspN4I	GGNNCC	4 cut(s)	144, 231, 318, 423
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	142
PsyI	GACNNNGTC	1 cut(s)	437
RseI	CAYNNNNRTG	2 cut(s)	98, 104
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	129, 142, 192
Sau96I	GGNCC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	4 cut(s)	12, 364, 423, 450
SmiMI	CAYNNNNRTG	2 cut(s)	98, 104
Sse9I	AATT	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	450
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	67, 127
TasI	AATT	1 cut(s)	164
TfiI	GAWTC	2 cut(s)	89, 517
TscAI	CASTG	2 cut(s)	132, 153
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	2 cut(s)	132, 153
Tth111I	GACNNNGTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.