Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

34379852 .. 34381233

Gene Structure 1382 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1279400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGAAAGTAGTGTTGAAATTGGAAGTATACAACGAGAAGTCTAAGAAGAAAGCCATGAAGGCCGTGTCGGGGCTTGAAGGGCTTGATTCAATTTCCATGGATATGAAGGACAAGAAGTTGACGGTCACAGGGGACATAGATCCGGTGGAGTTGGTGGCAAGATTAAGGAAGCTTTACCATACTGAGATACTCTCAGTCGGACCGGCAAAGGAGGAGAAGAAGAAGGAGGAGCCAAAGAAGGAGGAGCCAAAGAAGGAGCAGCCGAAGAAGAAAGATCCAAAGGACGAATTGGCTGAGATTATGAGGGCCTACCAAGCTCAGTATCCTCCAATGCCTACATATTACTGCGTAAGAAGTGCAGAAGAGGATCCCAATTCTTGTGTCATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

8.81

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	13 - 59	2.8e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	30
AclWI	GGATC	4 cut(s)	137, 272, 365, 378
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	19, 80, 93
AluBI	AGCT	2 cut(s)	175, 320
AluI	AGCT	2 cut(s)	175, 320
AlwI	GGATC	4 cut(s)	137, 272, 365, 378
AoxI	GGCC	2 cut(s)	63, 309
ApeKI	GCWGC	1 cut(s)	262
AspS9I	GGNCC	2 cut(s)	203, 309
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	336
BfuI	GTATCC	1 cut(s)	336
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 309
BmiI	GGNNCC	3 cut(s)	234, 249, 372
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	4 cut(s)	177, 210, 288, 335
BseRI	GAGGAG	3 cut(s)	230, 245, 260
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	65, 311
BsiSI	CCGG	2 cut(s)	146, 206
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	65, 311
Bsp143I	GATC	3 cut(s)	142, 277, 370
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	2 cut(s)	65, 311
BspCNI	CTCAG	4 cut(s)	178, 209, 289, 334
BspLI	GGNNCC	3 cut(s)	234, 249, 372
BspPI	GGATC	4 cut(s)	137, 272, 365, 378
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	142, 277, 370
BssNAI	GTATAC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	360
BstDEI	CTNAG	5 cut(s)	45, 186, 196, 297, 321
BstDSI	CCRYGG	1 cut(s)	99
BstKTI	GATC	3 cut(s)	145, 280, 373
BstMBI	GATC	3 cut(s)	142, 277, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	3 cut(s)	142, 277, 370
BstYI	RGATCY	3 cut(s)	142, 277, 370
BstZ17I	GTATAC	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	65, 311
BtgI	CCRYGG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	203, 309
CpoI	CGGWCCG	1 cut(s)	203
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	2 cut(s)	58, 100
DdeI	CTNAG	5 cut(s)	45, 186, 196, 297, 321
DpnI	GATC	3 cut(s)	144, 279, 372
DpnII	GATC	3 cut(s)	142, 277, 370
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	2 cut(s)	61, 103
FaiI	YATR	8 cut(s)	31, 59, 101, 107, 140, 183, 305, 343
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	57, 99
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	263
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	65, 311
HapII	CCGG	2 cut(s)	146, 206
Hin1II	CATG	2 cut(s)	61, 103
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	146, 206
Hpy166II	GTNNAC	2 cut(s)	31, 123
Hpy188I	TCNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	31, 123
HpyAV	CCTTC	6 cut(s)	55, 74, 103, 220, 235, 250
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
HpyF3I	CTNAG	5 cut(s)	45, 186, 196, 297, 321
Hsp92II	CATG	2 cut(s)	61, 103
Kzo9I	GATC	3 cut(s)	142, 277, 370
LmnI	GCTCC	3 cut(s)	232, 247, 259
LpnPI	CCDG	3 cut(s)	117, 159, 219
Lsp1109I	GCAGC	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	144, 279, 372
MboI	GATC	3 cut(s)	142, 277, 370
MboII	GAAGA	7 cut(s)	16, 61, 232, 235, 280, 283, 377
MflI	RGATCY	3 cut(s)	142, 277, 370
MluCI	AATT	4 cut(s)	20, 93, 290, 376
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	208, 223, 238, 300, 339, 361
MseI	TTAA	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	104
MspI	CCGG	2 cut(s)	146, 206
MwoI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	3 cut(s)	142, 277, 370
NlaIII	CATG	2 cut(s)	61, 103
NlaIV	GGNNCC	3 cut(s)	234, 249, 372
NmuCI	GTSAC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	234, 249, 372
PspPI	GGNCC	2 cut(s)	203, 309
PsuI	RGATCY	3 cut(s)	142, 277, 370
RseI	CAYNNNNRTG	1 cut(s)	104
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	3 cut(s)	142, 277, 370
Sau96I	GGNCC	2 cut(s)	203, 309
SetI	ASST	2 cut(s)	177, 322
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	20, 93, 290, 376
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	4 cut(s)	20, 93, 290, 376
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 74, 122
VpaK11BI	GGWCC	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.