pycom01g09950

Fk506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000998
Physical Location & Seq
Forward (+)
10742713 .. 10744462
1750 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09950.2

Sequence Viewer

Length: 471 bp
ATGAAGAAGTTTGTACTGAAGTTGGATTTGCCTGATGGCAAAGCCAAGCAGAAGGCTCTCAAGACAGTCTCTACTCTTTCAGGCATTGATTCCATTGCCATGGACATGAAAGATAAGAAATTGACAGTGATCGGAAGCGTGGACCCGGTGACTGTGGTGAGCAAGTTGCGCAAGTATTGGCAAACAGATATAATCTCAGTAGGACCAGCAGTAGAGCCTAAGAAAGAGGAACCAAAGAAGGAAGAGCCCAAGAAAGACGAACCAAAGAAAGAAGAAGAGGCGAAGAAGGAGGAGCCCAAGAAAGAAGAAGAAGCCAAGAAGGAGGAGCCGAAGAAAGAAGAAGAAAAGAAGGAAGAAGAGAAGAAGAAAGAGCTAGACCCCGTCTTGGCGTACAAAGCGTACCCCCACATGACCACATACTACTATGTGCACAGCATGGAAGAGAATCCGAATTCATGCGTTATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

157

Amino Acids

18.03

Weight (kDa)

7.67

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 170
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 3 cut(s) 15, 392, 401
AfiI CCNNNNNNNGG 1 cut(s) 385
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 1 cut(s) 73
Alw44I GTGCAC 1 cut(s) 428
ApaLI GTGCAC 1 cut(s) 428
ApoI RAATTY 1 cut(s) 451
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 142, 203
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 160, 169
AvaII GGWCC 2 cut(s) 142, 203
BaeGI GKGCMC 1 cut(s) 432
BanII GRGCYC 2 cut(s) 249, 297
Bbv12I GWGCWC 1 cut(s) 432
BccI CCATC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 374, 469
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 2 cut(s) 142, 203
BmgT120I GGNCC 2 cut(s) 142, 203
BmiI GGNNCC 4 cut(s) 144, 231, 294, 327
BmrFI CCNGG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 305, 338
BseSI GKGCMC 1 cut(s) 432
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 73
Bsp1286I GDGCHC 3 cut(s) 249, 297, 432
Bsp143I GATC 1 cut(s) 129
Bsp19I CCATGG 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 209
BspLI GGNNCC 4 cut(s) 144, 231, 294, 327
BspQI GCTCTTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 3 cut(s) 67, 127, 154
Bst6I CTCTTC 4 cut(s) 237, 270, 351, 435
BstDEI CTNAG 2 cut(s) 196, 219
BstDSI CCRYGG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 1 cut(s) 132
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 168, 395
BstSCI CCNGG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 432
BstXI CCANNNNNNTGG 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 132
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 142, 203
Csp6I GTAC 3 cut(s) 14, 391, 400
CviAII CATG 5 cut(s) 100, 106, 409, 436, 456
CviJI RGCY 8 cut(s) 44, 56, 217, 247, 295, 314, 328, 373
CviKI_1 RGCY 8 cut(s) 44, 56, 217, 247, 295, 314, 328, 373
CviQI GTAC 3 cut(s) 14, 391, 400
DdeI CTNAG 2 cut(s) 196, 219
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 4 cut(s) 237, 270, 351, 435
EarI CTCTTC 4 cut(s) 237, 270, 351, 435
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 249, 297
Eco47I GGWCC 2 cut(s) 142, 203
Eco57I CTGAAG 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 2 cut(s) 249, 297
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 103, 109, 412, 439, 459
FaiI YATR 8 cut(s) 101, 107, 191, 410, 418, 426, 437, 457
FatI CATG 5 cut(s) 99, 105, 408, 435, 455
FriOI GRGCYC 2 cut(s) 249, 297
FspBI CTAG 2 cut(s) 374, 469
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 1 cut(s) 170
HapII CCGG 1 cut(s) 146
HhaI GCGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 103, 109, 412, 439, 459
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 89, 445
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 160, 169
Hpy166II GTNNAC 2 cut(s) 142, 430
Hpy188I TCNGA 2 cut(s) 134, 450
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 2 cut(s) 142, 430
HpyAV CCTTC 5 cut(s) 46, 232, 280, 313, 343
HpyCH4III ACNGT 3 cut(s) 67, 127, 154
HpyCH4V TGCA 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 395
HpyF3I CTNAG 2 cut(s) 196, 219
Hsp92II CATG 5 cut(s) 103, 109, 412, 439, 459
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 129
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 292, 325
LpnPI CCDG 4 cut(s) 45, 66, 159, 219
MaeI CTAG 2 cut(s) 374, 469
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 249, 297, 432
MluCI AATT 2 cut(s) 119, 451
MnlI CCTC 4 cut(s) 220, 271, 283, 316
MslI CAYNNNNRTG 2 cut(s) 98, 104
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 168, 395
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 99
NdeII GATC 1 cut(s) 129
NlaIII CATG 5 cut(s) 103, 109, 412, 439, 459
NlaIV GGNNCC 4 cut(s) 144, 231, 294, 327
NmuCI GTSAC 1 cut(s) 148
NsbI TGCGCA 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 2 cut(s) 89, 445
PflFI GACNNNGTC 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 144, 231, 294, 327
PspPI GGNCC 2 cut(s) 142, 203
PsyI GACNNNGTC 1 cut(s) 380
RsaI GTAC 3 cut(s) 15, 392, 401
RsaNI GTAC 3 cut(s) 14, 391, 400
RseI CAYNNNNRTG 2 cut(s) 98, 104
SapI GCTCTTC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 142, 203
ScrFI CCNGG 1 cut(s) 146
SduI GDGCHC 3 cut(s) 249, 297, 432
SetI ASST 1 cut(s) 375
SinI GGWCC 2 cut(s) 142, 203
SmiMI CAYNNNNRTG 2 cut(s) 98, 104
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 119, 451
SspMI CTAG 2 cut(s) 374, 469
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 67, 127, 154
TasI AATT 2 cut(s) 119, 451
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 89, 445
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 3 cut(s) 17, 122, 444
TspRI CASTG 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 380
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 142, 203
XapI RAATTY 1 cut(s) 451
XspI CTAG 2 cut(s) 374, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.