MD01G1070300.v1.1

Fk506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000998
Physical Location & Seq
Forward (+)
17454634 .. 17457099
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1070300.v1.1.491

Sequence Viewer

Length: 498 bp
ATGAAGTTTGTACTGAAGTTGGATTTGCCTGATGACAAAGCCAAGCAGAAGGCTCTCAAGACAGTCTCTACTCTTTCAGGCATCGATTCCATTGCCATGGACATGAAGGATAAGAAATTAACAGTGATCGGAAGCGTGGACCCGGTGACTGTGGTGAGCAAGTTGCGCAAGTATTGGCAAACAGATATAATCTCAGTAGGACCAGCAGTAGAGCCTAAGAAAGAGGAACCAAAGAAGGAAGAGCCCAAGAAAGACGAACCAAAGAAAGAAGAAGAGGCGAAGAAGGAGGAGCCCAAGAAAGAAGAACCCAAGAAAGAAGAAGAAGCCAAGAAGGAGGAGCCGAAGAAAGAAGAAGAGAAGAAGGAAGAAGAGAAGAAGAAAGAGCCAGACCCCGTCTTGGAGCTCGTCAAGGCATACAAAGCGTACAACCCCCACATGACCAAATACTACTATGTGCAAAGCATGGAAGAGAATCCGAATTCATGCGTTATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

6.68

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 14 - 58 6.7e-07 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 1 cut(s) 35
AfaI GTAC 2 cut(s) 12, 425
AfiI CCNNNNNNNGG 1 cut(s) 397
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 1 cut(s) 70
ApoI RAATTY 1 cut(s) 478
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 2 cut(s) 139, 200
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 157, 166
AvaII GGWCC 2 cut(s) 139, 200
BanII GRGCYC 3 cut(s) 246, 294, 405
Bbv12I GWGCWC 1 cut(s) 405
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 143
Bme18I GGWCC 2 cut(s) 139, 200
BmgT120I GGNCC 2 cut(s) 139, 200
BmiI GGNNCC 4 cut(s) 141, 228, 291, 339
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 143
Bsa29I ATCGAT 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 2 cut(s) 302, 350
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 397
BsmAI GTCTC 1 cut(s) 70
Bsp1286I GDGCHC 3 cut(s) 246, 294, 405
Bsp143I GATC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 96
BspCNI CTCAG 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 141, 228, 291, 339
BspQI GCTCTTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 3 cut(s) 64, 124, 151
Bst6I CTCTTC 5 cut(s) 234, 267, 348, 363, 462
BstDEI CTNAG 2 cut(s) 193, 216
BstDSI CCRYGG 1 cut(s) 96
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 165, 419
BstSCI CCNGG 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 129
CfoI GCGC 1 cut(s) 168
Cfr13I GGNCC 2 cut(s) 139, 200
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 11, 424
CviAII CATG 5 cut(s) 97, 103, 436, 463, 483
CviJI RGCY 9 cut(s) 41, 53, 214, 244, 292, 326, 340, 385, 403
CviKI_1 RGCY 9 cut(s) 41, 53, 214, 244, 292, 326, 340, 385, 403
CviQI GTAC 2 cut(s) 11, 424
DdeI CTNAG 2 cut(s) 193, 216
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eam1104I CTCTTC 5 cut(s) 234, 267, 348, 363, 462
EarI CTCTTC 5 cut(s) 234, 267, 348, 363, 462
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 3 cut(s) 246, 294, 405
Eco47I GGWCC 2 cut(s) 139, 200
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 3 cut(s) 246, 294, 405
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 5 cut(s) 100, 106, 439, 466, 486
FaiI YATR 8 cut(s) 98, 104, 188, 415, 437, 453, 464, 484
FatI CATG 5 cut(s) 96, 102, 435, 462, 482
FriOI GRGCYC 3 cut(s) 246, 294, 405
FspBI CTAG 1 cut(s) 496
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 1 cut(s) 167
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 168
Hin1II CATG 5 cut(s) 100, 106, 439, 466, 486
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 2 cut(s) 86, 472
HpaII CCGG 1 cut(s) 143
HphI GGTGA 2 cut(s) 157, 166
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 131, 477
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 6 cut(s) 43, 100, 229, 277, 325, 355
HpyCH4III ACNGT 3 cut(s) 64, 124, 151
HpyCH4V TGCA 1 cut(s) 457
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 419
HpyF3I CTNAG 2 cut(s) 193, 216
Hsp92II CATG 5 cut(s) 100, 106, 439, 466, 486
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 289, 337, 400
LpnPI CCDG 5 cut(s) 42, 63, 156, 216, 399
LweI GCATC 1 cut(s) 90
MaeI CTAG 1 cut(s) 496
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 3 cut(s) 246, 294, 405
MluCI AATT 2 cut(s) 116, 478
MnlI CCTC 4 cut(s) 217, 268, 280, 328
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 2 cut(s) 95, 101
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 165, 419
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 96
NdeII GATC 1 cut(s) 126
NlaIII CATG 5 cut(s) 100, 106, 439, 466, 486
NlaIV GGNNCC 4 cut(s) 141, 228, 291, 339
NmuCI GTSAC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 86, 472
PflFI GACNNNGTC 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 405
PspN4I GGNNCC 4 cut(s) 141, 228, 291, 339
PspPI GGNCC 2 cut(s) 139, 200
PsyI GACNNNGTC 1 cut(s) 392
RsaI GTAC 2 cut(s) 12, 425
RsaNI GTAC 2 cut(s) 11, 424
RseI CAYNNNNRTG 2 cut(s) 95, 101
SacI GAGCTC 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 119
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 139, 200
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 3 cut(s) 246, 294, 405
SetI ASST 1 cut(s) 405
SfaNI GCATC 1 cut(s) 90
SinI GGWCC 2 cut(s) 139, 200
SmiMI CAYNNNNRTG 2 cut(s) 95, 101
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 2 cut(s) 116, 478
SspMI CTAG 1 cut(s) 496
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 3 cut(s) 64, 124, 151
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 116, 478
TatI WGTACW 1 cut(s) 10
TfiI GAWTC 2 cut(s) 86, 472
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 17, 119, 471
TspRI CASTG 1 cut(s) 129
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 2 cut(s) 139, 200
XapI RAATTY 1 cut(s) 478
XspI CTAG 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.