Rw7G013940

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000998
Physical Location & Seq
Reverse (-)
13398416 .. 13400049
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G013940.1

Sequence Viewer

Length: 393 bp
ATGAAGAAGGTGGTACTGAAACTTGATTTGCACGATGACAAGGAGAAGCAGAAGGCGTTGAAAGCAGTGTCTGGCCTTTCTGGCATTGATTCCATTGCTATGGACATGAAAGAGAGGAAATTAACTGTGACTGGCAATATTGATCCGGTTGATGTGGTGAACAAGTTGCGGAAAGGTAACTGGCACACTGAGATTTTGACAGTTGGGCCGGCGAAAGAAGAGAAGAAGGATGATAAGAAAGATGGAGCTAAGAAAGATGATAACAAGAAGAAGGACCCGAATGAGCAAATTGCTGAGCTTGTGCGAGCCTATCAAAACTATAATCCGCAGATGACGAGGTACTATTATGTGCAGAGCGCAGAAGAGAACCCAAATGCTTGTGTTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

130

Amino Acids

14.76

Weight (kDa)

8.82

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 9 - 58 2e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 169, 326
AclWI GGATC 1 cut(s) 137
AfaI GTAC 2 cut(s) 15, 341
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 2 cut(s) 248, 298
AluI AGCT 2 cut(s) 248, 298
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 73, 206
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 2 cut(s) 206, 274
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 1 cut(s) 274
BccI CCATC 1 cut(s) 236
BglI GCCNNNNNGGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 206, 274
BmiI GGNNCC 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 136, 185
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 180, 285
BseNI ACTGG 2 cut(s) 136, 185
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 2 cut(s) 75, 208
BsiSI CCGG 2 cut(s) 146, 209
BsnI GGCC 2 cut(s) 75, 208
Bsp143I GATC 1 cut(s) 142
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 2 cut(s) 169, 326
BspANI GGCC 2 cut(s) 75, 208
BspCNI CTCAG 2 cut(s) 181, 286
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 137
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 2 cut(s) 136, 185
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 1 cut(s) 142
Bst4CI ACNGT 2 cut(s) 127, 202
Bst6I CTCTTC 2 cut(s) 213, 357
BstC8I GCNNGC 2 cut(s) 210, 306
BstDEI CTNAG 3 cut(s) 189, 249, 294
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 62, 81
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 75, 208
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 72, 186
Cac8I GCNNGC 2 cut(s) 210, 306
CaiI CAGNNNCTG 1 cut(s) 71
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 206, 274
Csp6I GTAC 2 cut(s) 14, 340
CviAII CATG 1 cut(s) 106
CviJI RGCY 5 cut(s) 75, 208, 248, 298, 308
CviKI_1 RGCY 5 cut(s) 75, 208, 248, 298, 308
CviQI GTAC 2 cut(s) 14, 340
DdeI CTNAG 3 cut(s) 189, 249, 294
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 213, 357
EarI CTCTTC 2 cut(s) 213, 357
Eco47I GGWCC 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 274
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 101, 107, 321, 348
FatI CATG 1 cut(s) 105
FokI GGATG 1 cut(s) 242
GlaI GCGC 1 cut(s) 358
HaeIII GGCC 2 cut(s) 75, 208
HapII CCGG 2 cut(s) 146, 209
HhaI GCGC 1 cut(s) 359
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HinfI GANTC 1 cut(s) 89
HpaII CCGG 2 cut(s) 146, 209
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 46, 220, 265
HpyCH4III ACNGT 2 cut(s) 127, 202
HpyCH4V TGCA 2 cut(s) 31, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 81
HpyF3I CTNAG 3 cut(s) 189, 249, 294
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 357
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 6 cut(s) 57, 66, 117, 159, 166, 222
MaeIII GTNAC 2 cut(s) 127, 176
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 5 cut(s) 16, 230, 235, 280, 374
MluCI AATT 2 cut(s) 119, 288
MnlI CCTC 2 cut(s) 108, 330
MroNI GCCGGC 1 cut(s) 208
MseI TTAA 2 cut(s) 122, 391
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 2 cut(s) 146, 209
MwoI GCNNNNNNNGC 2 cut(s) 62, 81
NaeI GCCGGC 1 cut(s) 210
NdeII GATC 1 cut(s) 142
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 2 cut(s) 206, 274
PspPPI RGGWCCY 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 2 cut(s) 15, 341
RsaNI GTAC 2 cut(s) 14, 340
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 122, 391
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 206, 274
SetI ASST 5 cut(s) 12, 178, 250, 300, 341
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 119, 288
SsiI CCGC 2 cut(s) 169, 326
SspI AATATT 1 cut(s) 139
TaaI ACNGT 2 cut(s) 127, 202
TasI AATT 2 cut(s) 119, 288
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 2 cut(s) 122, 391
Tru9I TTAA 2 cut(s) 122, 391
TscAI CASTG 2 cut(s) 72, 193
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 17, 122
TspRI CASTG 2 cut(s) 72, 193
VpaK11BI GGWCC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.