Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Reverse (-)

14293098 .. 14294939

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAGAAGTTTGTACTGAAGTTGGATTTGCCTGATGACAAAGCCAAGCAGAAGGCTCTCAAGGCAGTCTCTACTCTTTCTGGCATCGATTCTATTGCCATGGACATGAAGGATAAGAAATTAACAGTGATCGGAAGCGTGGACCCAGTGACTGTAGTGAGCAAGTTGCGCAAATACTGGCAAACACATATAATCTCAGTAGGACCAGCAGTAGAGCCTAAGAAAGAGGAACCAAAGAAGGAAGAACCCAAGAAAGATGAACCGAAGAAAGAAGAAGAAAAGAAAGAAGAAGAGGCGAAGAAGGAGGAGGCCAAGAAAGAAGAACCGAAGAAAGAAGAAGCGAAGAAGGAGGAGCCAAAGAAAGAAGAAGAGAAGAAGAAAGAGCCAGACCCCGTCTTAGAGCTCGTCAAGGCATACAAAGCGTACAACCCCCACATGACTACATATTACCATGTGCAAAGCATGGAAGAGAATCCAAATTCTTGCGTTATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

166

Amino Acids

19.02

Weight (kDa)

8.27

Isoelectric Point (pI)

52.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	478
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	15, 425
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	1 cut(s)	73
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	478
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	142, 203
AvaII	GGWCC	2 cut(s)	142, 203
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcoDI	GTCTC	1 cut(s)	73
BfmI	CTRYAG	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	142, 203
BmgT120I	GGNCC	2 cut(s)	142, 203
BmiI	GGNNCC	3 cut(s)	144, 231, 354
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	99
Bse1I	ACTGG	2 cut(s)	146, 182
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	146, 182
BseRI	GAGGAG	2 cut(s)	320, 365
BshFI	GGCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	129
Bsp19I	CCATGG	1 cut(s)	99
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	209
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	144, 231, 354
BsrI	ACTGG	2 cut(s)	146, 182
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	99
Bst4CI	ACNGT	2 cut(s)	127, 154
Bst6I	CTCTTC	3 cut(s)	285, 363, 462
BstDEI	CTNAG	3 cut(s)	196, 219, 397
BstDSI	CCRYGG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 168, 419, 492
BstSFI	CTRYAG	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	132, 153
CaiI	CAGNNNCTG	1 cut(s)	152
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	142, 203
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	14, 424
CviAII	CATG	5 cut(s)	100, 106, 436, 452, 463
CviJI	RGCY	7 cut(s)	44, 56, 217, 311, 355, 385, 403
CviKI_1	RGCY	7 cut(s)	44, 56, 217, 311, 355, 385, 403
CviQI	GTAC	2 cut(s)	14, 424
DdeI	CTNAG	3 cut(s)	196, 219, 397
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	3 cut(s)	285, 363, 462
EarI	CTCTTC	3 cut(s)	285, 363, 462
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	142, 203
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	99
FaeI	CATG	5 cut(s)	103, 109, 439, 455, 466
FaiI	YATR	9 cut(s)	101, 107, 189, 191, 415, 437, 445, 453, 464
FatI	CATG	5 cut(s)	99, 105, 435, 451, 462
FriOI	GRGCYC	1 cut(s)	405
FspI	TGCGCA	1 cut(s)	170
GlaI	GCGC	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	103, 109, 439, 455, 466
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	89, 472
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	142
HpyAV	CCTTC	5 cut(s)	46, 103, 232, 295, 340
HpyCH4III	ACNGT	2 cut(s)	127, 154
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 168, 419, 492
HpyF3I	CTNAG	3 cut(s)	196, 219, 397
Hsp92II	CATG	5 cut(s)	103, 109, 439, 455, 466
HspAI	GCGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	6 cut(s)	45, 66, 159, 163, 219, 399
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	2 cut(s)	119, 478
MnlI	CCTC	5 cut(s)	220, 286, 298, 301, 343
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	62, 168, 419, 492
NcoI	CCATGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	5 cut(s)	103, 109, 439, 455, 466
NlaIV	GGNNCC	3 cut(s)	144, 231, 354
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	89, 472
PflFI	GACNNNGTC	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	144, 231, 354
PspPI	GGNCC	2 cut(s)	142, 203
PstNI	CAGNNNCTG	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	392
RsaI	GTAC	2 cut(s)	15, 425
RsaNI	GTAC	2 cut(s)	14, 424
RseI	CAYNNNNRTG	1 cut(s)	104
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	142, 203
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	142, 203
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	119, 478
SstI	GAGCTC	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	127, 154
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	119, 478
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	2 cut(s)	89, 472
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TscAI	CASTG	2 cut(s)	132, 153
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	17, 122, 273
TspRI	CASTG	2 cut(s)	132, 153
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	2 cut(s)	142, 203
XapI	RAATTY	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.