Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

19749221 .. 19750021

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGAAAGTAGTGTTGAAATTGGAATTATACGACGAGAAGGGTAAGAAGAAAGCCATGAGGGCCGTCTCGGGGCTTGAAGGGCTTGATTCAATTTCTATAGATATGAAGGACAAGAAACTGACGGTCACAGGGGACATAGATCCAGTGGATTTGGTGGGAAGATTGAAGAAGCTTTGCCGGACAGAGATAGTCTCGGTCGGACCGGCAAAGGAGGAGAAGAAGAAAGAGGAGCCAAAGAAGGAGGAGACGAAGAAGAAAGATCCAAAGGACGAAATGGCTGAGCTTATCAAGGCCTACCAAGCTCATTATCCACCAATGCCTGCATATTATTACGTAAAAAGTTCAGAAGAGGATCCCAATGCATGTGTCATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

127

Amino Acids

14.26

Weight (kDa)

8.61

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	12 - 58	4.5e-08	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	137, 257, 350, 363
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	4 cut(s)	19, 80, 93, 169
AluBI	AGCT	3 cut(s)	175, 286, 305
AluI	AGCT	3 cut(s)	175, 286, 305
Alw26I	GTCTC	3 cut(s)	73, 199, 242
AlwI	GGATC	4 cut(s)	137, 257, 350, 363
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	2 cut(s)	63, 294
AspS9I	GGNCC	2 cut(s)	63, 203
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	73, 199, 242
BfmI	CTRYAG	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	63, 203
BmiI	GGNNCC	2 cut(s)	234, 357
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
Bpu1102I	GCTNAGC	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	3 cut(s)	230, 245, 260
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	65, 296
BsiEI	CGRYCG	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	181, 206
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	3 cut(s)	73, 199, 242
BsmBI	CGTCTC	2 cut(s)	73, 242
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	65, 296
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	142, 262, 355
Bsp1720I	GCTNAGC	1 cut(s)	282
BspANI	GGCC	2 cut(s)	65, 296
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	234, 357
BspPI	GGATC	4 cut(s)	137, 257, 350, 363
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	3 cut(s)	142, 262, 355
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	282
BstKTI	GATC	3 cut(s)	145, 265, 358
BstMAI	GTCTC	3 cut(s)	73, 199, 242
BstMBI	GATC	3 cut(s)	142, 262, 355
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 82, 302
BstNSI	RCATGY	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	337
BstX2I	RGATCY	3 cut(s)	142, 262, 355
BstYI	RGATCY	3 cut(s)	142, 262, 355
BsuRI	GGCC	2 cut(s)	65, 296
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	63, 203
CpoI	CGGWCCG	1 cut(s)	203
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	2 cut(s)	58, 366
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	144, 264, 357
DpnII	GATC	3 cut(s)	142, 262, 355
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	337
Eco147I	AGGCCT	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	367
Esp3I	CGTCTC	2 cut(s)	73, 242
FaeI	CATG	2 cut(s)	61, 369
FaiI	YATR	7 cut(s)	31, 59, 101, 107, 140, 328, 367
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	57, 365
HaeIII	GGCC	2 cut(s)	65, 296
HapII	CCGG	2 cut(s)	181, 206
Hin1II	CATG	2 cut(s)	61, 369
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	181, 206
Hpy188I	TCNGA	2 cut(s)	203, 349
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	34, 74, 103, 235
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	326, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 82, 302
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	61, 369
Kzo9I	GATC	3 cut(s)	142, 262, 355
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	117, 159, 194, 219, 336
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	144, 264, 357
MboI	GATC	3 cut(s)	142, 262, 355
MboII	GAAGA	9 cut(s)	16, 61, 174, 181, 232, 235, 265, 268, 362
MflI	RGATCY	3 cut(s)	142, 262, 355
MluCI	AATT	3 cut(s)	20, 26, 93
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	54, 208, 223, 238, 346
Mph1103I	ATGCAT	1 cut(s)	367
MspI	CCGG	2 cut(s)	181, 206
MwoI	GCNNNNNNNGC	3 cut(s)	62, 82, 302
NdeII	GATC	3 cut(s)	142, 262, 355
NlaIII	CATG	2 cut(s)	61, 369
NlaIV	GGNNCC	2 cut(s)	234, 357
NmuCI	GTSAC	1 cut(s)	127
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	234, 357
PspPI	GGNCC	2 cut(s)	63, 203
PsuI	RGATCY	3 cut(s)	142, 262, 355
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	142, 262, 355
Sau96I	GGNCC	2 cut(s)	63, 203
SetI	ASST	4 cut(s)	177, 288, 307, 339
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	203
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	3 cut(s)	20, 26, 93
SseBI	AGGCCT	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	339
TaqII	GACCGA	1 cut(s)	187
TasI	AATT	3 cut(s)	20, 26, 93
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	203
XceI	RCATGY	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.