Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Reverse (-)

3009651 .. 3011057

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGAAAGTTGTGTTGTTGTTGGACGTACACGACGACAGGTCCAAGAAGAAAGCCATGAGGGCAGTCTCAGGGCTCGAAGGGCTAGATTCGATCTCGATGGACATGAAGGACAAGAAGCTCACGGTGACTGGGGACATAGATCCAGTGAACTTGGTGAGCAAGTTGAGGAAGCTATGCCGCACTGAGATAGTGTCGGTAGGACCAGCAAAAGAGGAAAAGAAGAAGGAAGAGCCAAAGAAAGAGGAACCCAAAAAGGGTGGGGAGAAGAAGAAAGATCCAAAAGATGAATTGGCTGAGCTGATCAAGGCCTACAGTGCATACAACCCACCAATGAGTACGCATTATTATGTGAGAAGTGTGGAGGAGGATCCCAATGCCTGTGTCATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

131

Amino Acids

14.73

Weight (kDa)

8.85

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 58	9.1e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	4 cut(s)	137, 272, 365, 378
AfaI	GTAC	2 cut(s)	30, 340
AfiI	CCNNNNNNNGG	1 cut(s)	257
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	3 cut(s)	121, 175, 301
AluI	AGCT	3 cut(s)	121, 175, 301
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	4 cut(s)	137, 272, 365, 378
AoxI	GGCC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	42, 203
AsuHPI	GGTGA	2 cut(s)	139, 169
AvaII	GGWCC	2 cut(s)	42, 203
BamHI	GGATCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	78
BccI	CCATC	1 cut(s)	94
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	181
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	42, 203
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	42, 203
BmiI	GGNNCC	2 cut(s)	249, 372
BmrI	ACTGGG	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	136, 146
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	84, 177, 288
BseNI	ACTGG	2 cut(s)	136, 146
BseRI	GAGGAG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	5 cut(s)	93, 142, 277, 303, 370
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	3 cut(s)	83, 178, 289
BspLI	GGNNCC	2 cut(s)	249, 372
BspPI	GGATC	4 cut(s)	137, 272, 365, 378
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	136, 146
BssMI	GATC	5 cut(s)	93, 142, 277, 303, 370
Bst4CI	ACNGT	2 cut(s)	127, 317
Bst6I	CTCTTC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	70, 186, 297
BstKTI	GATC	5 cut(s)	96, 145, 280, 306, 373
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	5 cut(s)	93, 142, 277, 303, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
BstSFI	CTRYAG	1 cut(s)	313
BstX2I	RGATCY	3 cut(s)	142, 277, 370
BstYI	RGATCY	3 cut(s)	142, 277, 370
BsuRI	GGCC	1 cut(s)	311
BtsIMutI	CAGTG	3 cut(s)	153, 183, 322
Cfr13I	GGNCC	2 cut(s)	42, 203
Csp6I	GTAC	2 cut(s)	29, 339
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	58, 106
CviJI	RGCY	9 cut(s)	56, 76, 85, 121, 175, 235, 296, 301, 311
CviKI_1	RGCY	9 cut(s)	56, 76, 85, 121, 175, 235, 296, 301, 311
CviQI	GTAC	2 cut(s)	29, 339
DdeI	CTNAG	3 cut(s)	70, 186, 297
DpnI	GATC	5 cut(s)	95, 144, 279, 305, 372
DpnII	GATC	5 cut(s)	93, 142, 277, 303, 370
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	42, 203
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	2 cut(s)	61, 109
FaiI	YATR	6 cut(s)	59, 107, 140, 178, 322, 351
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	2 cut(s)	57, 105
FbaI	TGATCA	1 cut(s)	303
Fnu4HI	GCNGC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	61, 109
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	2 cut(s)	139, 169
Hpy166II	GTNNAC	2 cut(s)	31, 151
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	31, 151
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	74, 103, 220
HpyCH4III	ACNGT	2 cut(s)	127, 317
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
HpyF3I	CTNAG	3 cut(s)	70, 186, 297
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	61, 109
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	5 cut(s)	93, 142, 277, 303, 370
LguI	GCTCTTC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	25, 57, 117, 159, 219
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	5 cut(s)	95, 144, 279, 305, 372
MboI	GATC	5 cut(s)	93, 142, 277, 303, 370
MboII	GAAGA	6 cut(s)	16, 61, 235, 242, 280, 283
MflI	RGATCY	3 cut(s)	142, 277, 370
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	290
MnlI	CCTC	6 cut(s)	54, 162, 208, 238, 358, 361
MslI	CAYNNNNRTG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
NdeII	GATC	5 cut(s)	93, 142, 277, 303, 370
NlaIII	CATG	2 cut(s)	61, 109
NlaIV	GGNNCC	2 cut(s)	249, 372
NmuCI	GTSAC	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	249, 372
PspPI	GGNCC	2 cut(s)	42, 203
PsuI	RGATCY	3 cut(s)	142, 277, 370
RsaI	GTAC	2 cut(s)	30, 340
RsaNI	GTAC	2 cut(s)	29, 339
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	5 cut(s)	93, 142, 277, 303, 370
Sau96I	GGNCC	2 cut(s)	42, 203
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	5 cut(s)	30, 44, 123, 177, 303
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	42, 203
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	1 cut(s)	290
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	127, 317
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	78, 92, 98
TasI	AATT	1 cut(s)	290
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	3 cut(s)	153, 190, 322
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	17, 122, 303
TspRI	CASTG	3 cut(s)	153, 190, 322
VpaK11BI	GGWCC	2 cut(s)	42, 203
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.