Rh7DG160600

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000998
Physical Location & Seq
Reverse (-)
14277424 .. 14279849
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG160600.1

Sequence Viewer

Length: 363 bp
ATGTCTCTGTTTCTCCTCTGTTCTTTCATTTTTGCAGGCATTGATTCCATTGCTATGGACATGAAAGAGAGGAAATTAACTGTGACTGGCAATATTGATCCGGTTGATGTGGTGAGCAAGTTGCGGAAAGGTAACTGGCACACTGAGATTTTGACAGTTGGGCCGGCGAAAGAAGAGAAGAAGGATGATAAGAAAGATGGAGCTAAGAAAGATGATGCCAAGAAAGAGGATAACAAGAAGAAGGACCCGAATGAGCAAATTGCTGAGCTTGTGCGAGCCTATCAAAACTATAATCCGCAGATGACGAGGTACTATTATGTGCAGAGCGCAGAAGAGAACCCAAATGCTTGTGTTATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

6.59

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 124, 296
AclWI GGATC 1 cut(s) 92
AfaI GTAC 1 cut(s) 311
AluBI AGCT 2 cut(s) 203, 268
AluI AGCT 2 cut(s) 203, 268
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 92
AoxI GGCC 1 cut(s) 161
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 2 cut(s) 161, 244
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 244
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 9
BlpI GCTNAGC 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 2 cut(s) 161, 244
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 100
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 2 cut(s) 91, 140
Bse3DI GCAATG 1 cut(s) 48
BseGI GGATG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 135, 255
BseNI ACTGG 2 cut(s) 91, 140
BseRI GAGGAG 1 cut(s) 5
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 1 cut(s) 163
BsiSI CCGG 2 cut(s) 101, 164
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 163
Bsp143I GATC 1 cut(s) 97
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 2 cut(s) 124, 296
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 2 cut(s) 136, 256
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 2 cut(s) 91, 140
BssAI RCCGGY 1 cut(s) 163
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 82, 157
Bst6I CTCTTC 2 cut(s) 168, 327
BstC8I GCNNGC 3 cut(s) 37, 165, 276
BstDEI CTNAG 3 cut(s) 144, 204, 264
BstF5I GGATG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 37, 165, 276
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 161, 244
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 61
CviJI RGCY 4 cut(s) 163, 203, 268, 278
CviKI_1 RGCY 4 cut(s) 163, 203, 268, 278
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 144, 204, 264
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 168, 327
EarI CTCTTC 2 cut(s) 168, 327
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 56, 62, 291, 318
FatI CATG 1 cut(s) 60
FokI GGATG 1 cut(s) 197
GlaI GCGC 1 cut(s) 328
HaeIII GGCC 1 cut(s) 163
HapII CCGG 2 cut(s) 101, 164
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 101, 164
HphI GGTGA 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 175, 235
HpyCH4III ACNGT 2 cut(s) 82, 157
HpyCH4V TGCA 2 cut(s) 35, 322
HpyF3I CTNAG 3 cut(s) 144, 204, 264
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 163
KroNI GCCGGC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 21, 72, 114, 121, 177
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 82, 131
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 4 cut(s) 185, 190, 250, 344
MluCI AATT 2 cut(s) 74, 258
MnlI CCTC 4 cut(s) 26, 63, 220, 300
MroNI GCCGGC 1 cut(s) 163
MseI TTAA 2 cut(s) 77, 361
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 2 cut(s) 101, 164
NaeI GCCGGC 1 cut(s) 165
NdeII GATC 1 cut(s) 97
NgoMIV GCCGGC 1 cut(s) 163
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 44
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 2 cut(s) 161, 244
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 77, 361
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 161, 244
SetI ASST 4 cut(s) 133, 205, 270, 311
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 53
Sse9I AATT 2 cut(s) 74, 258
SsiI CCGC 2 cut(s) 124, 296
SspI AATATT 1 cut(s) 94
TaaI ACNGT 2 cut(s) 82, 157
TasI AATT 2 cut(s) 74, 258
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 77, 361
Tru9I TTAA 2 cut(s) 77, 361
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 16, 77
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.