Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

65308349 .. 65309250

Gene Structure 902 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGAAAGTTGTGTTGTTGTTGGACGTACACGATGACAGGTCCAAGAAGAAAGCCATGAGGGCAGTCTCAGGGCTCGAAGGGCTAGATTCGATCTCGATGGACATGAAGGACAAGAAGCTCACGGTAACTGGGGAAATAGATCCAGTGAACTTGGTGAGCAAGTTGAGGAAGCTATGCCGCACTGAGATAGTGTCGGTAGGACCAGCAAAAGAGGAAAAGAAGAAGGAAGAGCAAAAGAAAGAGGAGCCCAAAAAGGGTGGGGAGAAGAAGAAAGATCCAAAAGATGAAGTGGCTGAGCTAATCAAGGCCTACAATGCATCCAACCCACCAATGAGTACGTATTATTATGTTAGAAGTGTGGAGGAGGATCCCAATGCCTGTGTCATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

8.85

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 58	3.5e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	4 cut(s)	137, 272, 365, 378
AfaI	GTAC	2 cut(s)	30, 340
AfiI	CCNNNNNNNGG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	121, 175, 301
AluI	AGCT	3 cut(s)	121, 175, 301
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	4 cut(s)	137, 272, 365, 378
AoxI	GGCC	1 cut(s)	309
AspS9I	GGNCC	2 cut(s)	42, 203
AsuHPI	GGTGA	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	42, 203
BamHI	GGATCC	1 cut(s)	370
BanII	GRGCYC	2 cut(s)	78, 252
BccI	CCATC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	181
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	42, 203
BmgT120I	GGNCC	2 cut(s)	42, 203
BmiI	GGNNCC	2 cut(s)	249, 372
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	329
BmuI	ACTGGG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	136, 146
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	3 cut(s)	84, 177, 288
BseNI	ACTGG	2 cut(s)	136, 146
BseRI	GAGGAG	2 cut(s)	260, 380
BshFI	GGCC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	78, 252
Bsp143I	GATC	4 cut(s)	93, 142, 277, 370
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	3 cut(s)	83, 178, 289
BspLI	GGNNCC	2 cut(s)	249, 372
BspPI	GGATC	4 cut(s)	137, 272, 365, 378
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	136, 146
BssMI	GATC	4 cut(s)	93, 142, 277, 370
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	70, 186, 297
BstF5I	GGATG	1 cut(s)	320
BstKTI	GATC	4 cut(s)	96, 145, 280, 373
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	93, 142, 277, 370
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
BstSNI	TACGTA	1 cut(s)	342
BstX2I	RGATCY	3 cut(s)	142, 277, 370
BstYI	RGATCY	3 cut(s)	142, 277, 370
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	320
BtsIMutI	CAGTG	2 cut(s)	153, 183
Cfr13I	GGNCC	2 cut(s)	42, 203
Csp6I	GTAC	2 cut(s)	29, 339
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	2 cut(s)	58, 106
CviJI	RGCY	9 cut(s)	56, 76, 85, 121, 175, 250, 296, 301, 311
CviKI_1	RGCY	9 cut(s)	56, 76, 85, 121, 175, 250, 296, 301, 311
CviQI	GTAC	2 cut(s)	29, 339
DdeI	CTNAG	3 cut(s)	70, 186, 297
DpnI	GATC	4 cut(s)	95, 144, 279, 372
DpnII	GATC	4 cut(s)	93, 142, 277, 370
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco105I	TACGTA	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	311
Eco24I	GRGCYC	2 cut(s)	78, 252
Eco47I	GGWCC	2 cut(s)	42, 203
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	2 cut(s)	78, 252
FaeI	CATG	2 cut(s)	61, 109
FaiI	YATR	4 cut(s)	59, 107, 178, 351
FatI	CATG	2 cut(s)	57, 105
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	307
FriOI	GRGCYC	2 cut(s)	78, 252
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	61, 109
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	31, 151
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	31, 151
HpyAV	CCTTC	3 cut(s)	74, 103, 220
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	2 cut(s)	27, 341
HpyCH4V	TGCA	1 cut(s)	320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
HpyF3I	CTNAG	3 cut(s)	70, 186, 297
HpySE526I	ACGT	2 cut(s)	27, 341
Hsp92II	CATG	2 cut(s)	61, 109
Kzo9I	GATC	4 cut(s)	93, 142, 277, 370
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	5 cut(s)	25, 57, 117, 159, 219
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	27, 341
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	95, 144, 279, 372
MboI	GATC	4 cut(s)	93, 142, 277, 370
MboII	GAAGA	6 cut(s)	16, 61, 235, 242, 280, 283
MflI	RGATCY	3 cut(s)	142, 277, 370
MhlI	GDGCHC	2 cut(s)	78, 252
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	6 cut(s)	54, 162, 208, 238, 358, 361
Mph1103I	ATGCAT	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	62, 82, 317
NdeII	GATC	4 cut(s)	93, 142, 277, 370
NlaIII	CATG	2 cut(s)	61, 109
NlaIV	GGNNCC	2 cut(s)	249, 372
NsiI	ATGCAT	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	182
Ppu21I	YACGTR	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	249, 372
PspPI	GGNCC	2 cut(s)	42, 203
PsuI	RGATCY	3 cut(s)	142, 277, 370
RsaI	GTAC	2 cut(s)	30, 340
RsaNI	GTAC	2 cut(s)	29, 339
SapI	GCTCTTC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	93, 142, 277, 370
Sau96I	GGNCC	2 cut(s)	42, 203
SduI	GDGCHC	2 cut(s)	78, 252
SetI	ASST	6 cut(s)	30, 44, 123, 177, 303, 344
SfaNI	GCATC	1 cut(s)	329
SinI	GGWCC	2 cut(s)	42, 203
SnaBI	TACGTA	1 cut(s)	342
SseBI	AGGCCT	1 cut(s)	311
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	2 cut(s)	30, 344
TaqI	TCGA	3 cut(s)	78, 92, 98
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	2 cut(s)	153, 190
TspDTI	ATGAA	3 cut(s)	17, 122, 303
TspRI	CASTG	2 cut(s)	153, 190
VpaK11BI	GGWCC	2 cut(s)	42, 203
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.