Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

13362899 .. 13363950

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAAGAAGGTGGTACTGAAATTGGATTTACATGATGACAAGCAAAAGCAAAAGGCCTTGAAAGCAGTCTCCAGCCTTACAGGCATTGACTCAATTGCTATGGACATGAAGGAGAAGAAACTAACGGTGATCGGCGACGTTGACCCGGTCCATGTGGTGGCTAAACTGAGAAAGTGGCACACAGAGATCCTGACAGTCGGGCCGGCAAAGGAAGAAAAGAAAGATGATAAGAAAGACGGAGGGGGTGCCAAAAAAGATGACAAGAAAGAAGATGATAAGAAGAAAACTGATCCAGTTGCTGAGCTTGTCAAAGCCTACCAAGCATACAATCCCCACATGACCAAGTACTACTATGTCCAAAGTGCTGAAGAAAACCCGAATTCCTGTGTTATCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

133

Amino Acids

14.86

Weight (kDa)

8.87

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AccB7I	CCANNNNNTGG	1 cut(s)	157
AclWI	GGATC	2 cut(s)	181, 284
AcsI	RAATTY	1 cut(s)	379
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	2 cut(s)	15, 347
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	61
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	181, 284
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	54, 200
ApoI	RAATTY	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	148, 200
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	73
BglI	GCCNNNNNGGC	1 cut(s)	81
BlpI	GCTNAGC	1 cut(s)	300
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	148, 200
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	158, 291
BseNI	ACTGG	1 cut(s)	293
BshFI	GGCC	2 cut(s)	56, 202
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	146, 203
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	56, 202
Bsp143I	GATC	3 cut(s)	129, 186, 289
Bsp1720I	GCTNAGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	56, 202
BspCNI	CTCAG	2 cut(s)	159, 292
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	181, 284
BspT107I	GGYRCC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	202
BssMI	GATC	3 cut(s)	129, 186, 289
Bst4CI	ACNGT	2 cut(s)	127, 196
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	167, 300
BstKTI	GATC	3 cut(s)	132, 189, 292
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	129, 186, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 81, 320
BstSCI	CCNGG	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	56, 202
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	148, 200
Csp6I	GTAC	2 cut(s)	14, 346
CviAII	CATG	4 cut(s)	32, 106, 152, 337
CviJI	RGCY	6 cut(s)	56, 75, 161, 202, 304, 314
CviKI_1	RGCY	6 cut(s)	56, 75, 161, 202, 304, 314
CviQI	GTAC	2 cut(s)	14, 346
DdeI	CTNAG	2 cut(s)	167, 300
DpnI	GATC	3 cut(s)	131, 188, 291
DpnII	GATC	3 cut(s)	129, 186, 289
Eco147I	AGGCCT	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	387
EcoRI	GAATTC	1 cut(s)	379
FaeI	CATG	4 cut(s)	35, 109, 155, 340
FaiI	YATR	7 cut(s)	33, 101, 107, 153, 325, 338, 354
FatI	CATG	4 cut(s)	31, 105, 151, 336
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	56, 202
HapII	CCGG	2 cut(s)	146, 203
Hin1II	CATG	4 cut(s)	35, 109, 155, 340
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	146, 203
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	127, 196
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 81, 320
HpyF3I	CTNAG	2 cut(s)	167, 300
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	35, 109, 155, 340
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	129, 186, 289
LpnPI	CCDG	6 cut(s)	66, 85, 159, 203, 216, 306
MaeII	ACGT	1 cut(s)	138
MalI	GATC	3 cut(s)	131, 188, 291
MboI	GATC	3 cut(s)	129, 186, 289
MboII	GAAGA	6 cut(s)	16, 127, 224, 281, 292, 380
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	3 cut(s)	20, 93, 379
MlyI	GAGTC	1 cut(s)	83
MnlI	CCTC	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	202
MseI	TTAA	1 cut(s)	397
MspI	CCGG	2 cut(s)	146, 203
MspR9I	CCNGG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	62, 81, 320
NaeI	GCCGGC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	3 cut(s)	129, 186, 289
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	35, 109, 155, 340
NlaIV	GGNNCC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	146
PflMI	CCANNNNNTGG	1 cut(s)	157
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	2 cut(s)	148, 200
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	186
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	15, 347
RsaNI	GTAC	2 cut(s)	14, 346
SaqAI	TTAA	1 cut(s)	397
Sau3AI	GATC	3 cut(s)	129, 186, 289
Sau96I	GGNCC	2 cut(s)	148, 200
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	3 cut(s)	12, 141, 306
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	3 cut(s)	20, 93, 379
SseBI	AGGCCT	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	127, 196
TaiI	ACGT	1 cut(s)	141
TasI	AATT	3 cut(s)	20, 93, 379
TatI	WGTACW	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	397
Tru9I	TTAA	1 cut(s)	397
TspDTI	ATGAA	2 cut(s)	17, 122
TspGWI	ACGGA	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	146
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.