Rorug01G0409000

FK506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000998
Physical Location & Seq
Reverse (-)
51481470 .. 51481805
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0409000.1

Sequence Viewer

Length: 336 bp
ATGCAGCAACGAGTGCATGACCATAGGAGATCAGCTGTGGTAGTAGGATGCGCAAACAAGGGTTGTTCAACAGGGATGGCAGGCGAGATAGAAAGAGAACTGGAGGCTGAGATGCGACCGGAAGAAGGAGCTGAGTGGTTGGGAGTAGGAAGGCTGAGAGACAAGTGTGGAGAAGGCAGAGGAGGAGCCGTGGAGCTGTTGGAGTGTTTGGAAAGGGAAGCAATTATGGGTGAAGACGAAGGCAAAGAACCAAACGACTACAACAGGAGGGCTCAAATCTTCTACAAAAGTGCAAGAGTTTTCCAGGCTCTTCGAGAGAGTGCTAGTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

5.19

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 69
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 35, 131, 196
AluI AGCT 3 cut(s) 35, 131, 196
Alw26I GTCTC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 4
AspLEI GCGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 242
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 38, 102
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 189
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 2 cut(s) 53, 81
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 3 cut(s) 99, 123, 146
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 195, 198
BseXI GCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 119
BsiEI CGRYCG 1 cut(s) 119
BsiSI CCGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 100, 124, 147
BspLI GGNNCC 1 cut(s) 187
BspQI GCTCTTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 305
Bst6I CTCTTC 1 cut(s) 315
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 108, 132, 155
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 2 cut(s) 53, 81
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 29
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 2 cut(s) 53, 81
Cac8I GCNNGC 1 cut(s) 82
CfoI GCGC 1 cut(s) 53
CviAII CATG 1 cut(s) 17
CviJI RGCY 8 cut(s) 35, 107, 131, 154, 188, 196, 272, 308
CviKI_1 RGCY 8 cut(s) 35, 107, 131, 154, 188, 196, 272, 308
DdeI CTNAG 3 cut(s) 108, 132, 155
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 315
EarI CTCTTC 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 274
FaeI CATG 1 cut(s) 20
FaiI YATR 3 cut(s) 18, 24, 227
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 60, 88
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 324
FspI TGCGCA 1 cut(s) 52
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 122
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HpaII CCGG 1 cut(s) 119
HphI GGTGA 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 119, 144, 167, 233
HpyCH4V TGCA 3 cut(s) 4, 16, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 3 cut(s) 108, 132, 155
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 1 cut(s) 29
LguI GCTCTTC 1 cut(s) 315
LmnI GCTCC 3 cut(s) 128, 185, 193
LpnPI CCDG 7 cut(s) 57, 66, 86, 132, 250, 290, 317
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 38, 102
MaeI CTAG 1 cut(s) 324
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 4 cut(s) 134, 245, 271, 302
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 97, 173, 176, 261
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 1 cut(s) 29
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 1 cut(s) 187
NsbI TGCGCA 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 315
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 274
SetI ASST 3 cut(s) 37, 133, 198
SfaNI GCATC 2 cut(s) 38, 102
Sse9I AATT 1 cut(s) 222
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 303
TaqI TCGA 1 cut(s) 313
TasI AATT 1 cut(s) 222
TseI GCWGC 1 cut(s) 4
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.