Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Reverse (-)

13336489 .. 13338146

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG159300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCATGCTTTGACTTTCTTGCTTAGATCATTGACTTCATCTCATGAATATGAATCCTACTCAAATTTATCTACTTTCGGAACAATATTTTGCTATAGTATTCATTTTACATGGGTTTGCATAAACTTAATGTCTCTGTTTCTCCTCTGCTCTTTCATTTTTGCAGGCATTGATTCCATTGCTATGGACATGAAAGAGAGGAAGTTAACTGTGACTGGCAATATTGATCCGGTTGATGTGGTGAACAAGTTGCGGAAAGGTAACTGGCACACTGAGATTTTGACAGTTGGGCCGGCGAAAGAAGAGAAGAAGGATGATAAGAAAGATGGAGGAGCTAAGAAAGATGATGACAAGAAGAAGGACCCGAATCAGCAAATTGCTGAGCTTGTGCGAGCCTATCAAAACTATAATCCGCAGATGACGAGGTACTATTATGTGCAGAGCGCAGAAGAGAACCCAAATGCTTGTGTTATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

159

Amino Acids

18.2

Weight (kDa)

6.41

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	253, 413
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	1 cut(s)	428
AluBI	AGCT	2 cut(s)	335, 385
AluI	AGCT	2 cut(s)	335, 385
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	290, 361
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	361
BccI	CCATC	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	290, 361
BmiI	GGNNCC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	220, 269
Bse3DI	GCAATG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	2 cut(s)	264, 372
BseNI	ACTGG	2 cut(s)	220, 269
BseRI	GAGGAG	2 cut(s)	134, 345
BsgI	GTGCAG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	230, 293
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	26, 226
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	253, 413
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	265, 373
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	220, 269
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	2 cut(s)	26, 226
Bst4CI	ACNGT	2 cut(s)	211, 286
Bst6I	CTCTTC	2 cut(s)	297, 444
BstC8I	GCNNGC	4 cut(s)	6, 166, 294, 393
BstDEI	CTNAG	4 cut(s)	23, 273, 336, 381
BstF5I	GGATG	1 cut(s)	319
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	29, 229
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	26, 226
BstNSI	RCATGY	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	94
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	4 cut(s)	6, 166, 294, 393
CciI	TCATGA	1 cut(s)	43
CfoI	GCGC	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	290, 361
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	4 cut(s)	5, 44, 111, 190
CviJI	RGCY	4 cut(s)	292, 335, 385, 395
CviKI_1	RGCY	4 cut(s)	292, 335, 385, 395
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	23, 273, 336, 381
DpnI	GATC	2 cut(s)	28, 228
DpnII	GATC	2 cut(s)	26, 226
Eam1104I	CTCTTC	2 cut(s)	297, 444
EarI	CTCTTC	2 cut(s)	297, 444
Eco47I	GGWCC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	8, 47, 114, 193
FatI	CATG	4 cut(s)	4, 43, 110, 189
FokI	GGATG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	2 cut(s)	230, 293
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	4 cut(s)	8, 47, 114, 193
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	53, 173, 367
HpaI	GTTAAC	1 cut(s)	207
HpaII	CCGG	2 cut(s)	230, 293
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	207, 244
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	207, 244
HpyAV	CCTTC	2 cut(s)	304, 352
HpyCH4III	ACNGT	2 cut(s)	211, 286
HpyCH4V	TGCA	4 cut(s)	4, 120, 164, 439
HpyF3I	CTNAG	4 cut(s)	23, 273, 336, 381
Hsp92II	CATG	4 cut(s)	8, 47, 114, 193
HspAI	GCGC	1 cut(s)	444
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	26, 226
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	5 cut(s)	150, 201, 243, 250, 306
MaeIII	GTNAC	2 cut(s)	211, 260
MalI	GATC	2 cut(s)	28, 228
MboI	GATC	2 cut(s)	26, 226
MboII	GAAGA	4 cut(s)	314, 319, 367, 461
MluCI	AATT	2 cut(s)	64, 375
MnlI	CCTC	4 cut(s)	155, 192, 323, 417
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	3 cut(s)	128, 206, 478
MslI	CAYNNNNRTG	2 cut(s)	48, 182
MspI	CCGG	2 cut(s)	230, 293
NaeI	GCCGGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	26, 226
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	8, 47, 114, 193
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PagI	TCATGA	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	294
PfeI	GAWTC	3 cut(s)	53, 173, 367
PpuMI	RGGWCCY	1 cut(s)	361
Psp5II	RGGWCCY	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	290, 361
PspPPI	RGGWCCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	48, 182
SaqAI	TTAA	3 cut(s)	128, 206, 478
Sau3AI	GATC	2 cut(s)	26, 226
Sau96I	GGNCC	2 cut(s)	290, 361
SetI	ASST	4 cut(s)	262, 337, 387, 428
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	48, 182
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	64, 375
SsiI	CCGC	2 cut(s)	253, 413
SspI	AATATT	2 cut(s)	87, 223
TaaI	ACNGT	2 cut(s)	211, 286
TasI	AATT	2 cut(s)	64, 375
TfiI	GAWTC	3 cut(s)	53, 173, 367
Tru1I	TTAA	3 cut(s)	128, 206, 478
Tru9I	TTAA	3 cut(s)	128, 206, 478
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	6 cut(s)	27, 60, 66, 92, 145, 206
TspRI	CASTG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	1 cut(s)	64
XceI	RCATGY	1 cut(s)	8
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.