Prupe.5G106100_v2.0.a1

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000998
Physical Location & Seq
Forward (+)
11237168 .. 11238761
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G106100.2

Sequence Viewer

Length: 384 bp
ATGAAGAAGGTGGTATTGAAATTGGATTTACACGATGACAGGCAAAAGCAGAAGGCCTTGAAATCAGTCTCCAGCCTTACTGGCATTGACTCTATTGCTATGGACATGAAGGAGAGGAAATTAACAGTGACCGGCGACATAGACCCGGTCGATGTGGTAGCCAAATTGAGAAAATGTTGGCACACAGACATACTAACAGTTGGACCAGCAAAAGAAGAAAAGAAAGATGATAAGAAAAAAGATGAAGGCAAGAAGGATGATGATAAGAAGAAAGACTCAGTTGCTGAGCTTGTCAAAGCCTACGAAGCCTACAATCCTTACATGACCAAGTACTACTGTGTGCAAAGTGCAGAAGAAAACCCTAATGCTTGTGTGATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

128

Amino Acids

14.41

Weight (kDa)

8.24

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 332
AgsI TTSAA 2 cut(s) 19, 61
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 203
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 1 cut(s) 73
BglI GCCNNNNNGGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 146
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 276, 291
BseNI ACTGG 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 369
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 2 cut(s) 132, 146
BsmAI GTCTC 1 cut(s) 73
BsnI GGCC 1 cut(s) 56
Bsp1720I GCTNAGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 277, 290
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 131
Bst4CI ACNGT 3 cut(s) 127, 199, 338
BstDEI CTNAG 2 cut(s) 277, 285
BstF5I GGATG 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 73
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 81, 305
BstSCI CCNGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 132
CaiI CAGNNNCTG 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 331
CviAII CATG 2 cut(s) 106, 322
CviJI RGCY 6 cut(s) 56, 75, 161, 289, 299, 308
CviKI_1 RGCY 6 cut(s) 56, 75, 161, 289, 299, 308
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 2 cut(s) 277, 285
Eco147I AGGCCT 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 203
FaeI CATG 2 cut(s) 109, 325
FaiI YATR 6 cut(s) 101, 107, 140, 191, 323, 379
FatI CATG 2 cut(s) 105, 321
FokI GGATG 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 55
HaeIII GGCC 1 cut(s) 56
HapII CCGG 2 cut(s) 132, 146
Hin1II CATG 2 cut(s) 109, 325
HinfI GANTC 2 cut(s) 89, 275
HpaII CCGG 2 cut(s) 132, 146
HpyAV CCTTC 4 cut(s) 46, 103, 239, 247
HpyCH4III ACNGT 3 cut(s) 127, 199, 338
HpyCH4V TGCA 2 cut(s) 343, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 305
HpyF3I CTNAG 2 cut(s) 277, 285
Hsp92II CATG 2 cut(s) 109, 325
LpnPI CCDG 6 cut(s) 25, 66, 85, 145, 159, 219
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 4 cut(s) 16, 227, 280, 365
MluCI AATT 3 cut(s) 20, 119, 164
MlyI GAGTC 2 cut(s) 83, 269
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 1 cut(s) 108
MseI TTAA 2 cut(s) 122, 382
MspI CCGG 2 cut(s) 132, 146
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 81, 305
NciI CCSGG 1 cut(s) 146
NlaIII CATG 2 cut(s) 109, 325
NmuCI GTSAC 1 cut(s) 127
PceI AGGCCT 1 cut(s) 56
PflFI GACNNNGTC 1 cut(s) 146
PleI GAGTC 2 cut(s) 83, 269
PpsI GAGTC 2 cut(s) 83, 269
PspPI GGNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 146
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 2 cut(s) 122, 382
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 2 cut(s) 83, 269
ScrFI CCNGG 1 cut(s) 146
SetI ASST 2 cut(s) 12, 291
SinI GGWCC 1 cut(s) 203
Sse9I AATT 3 cut(s) 20, 119, 164
SseBI AGGCCT 1 cut(s) 56
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 127, 199, 338
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 20, 119, 164
TatI WGTACW 1 cut(s) 330
Tru1I TTAA 2 cut(s) 122, 382
Tru9I TTAA 2 cut(s) 122, 382
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 17, 122, 258
TspRI CASTG 1 cut(s) 132
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 203
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.