Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

65303809 .. 65304725

Gene Structure 917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G037670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGAAAGTTGTGTTGTTGTTGGACGTACACGACGACAGGTCCAAGAAGAAAGCCATGAGGGCAGTCTCAGGGCTCGAAGGGCTAGATTCGATCTCGATGGACATGAAGGACAAGAAGCTGACGGTGACTGGGGACATAGATCCAGTGAACTTGGTGAGCAAGTTGAGGAAGCTATGCCGCACTGAGATAGTGTCGGTAGGACCAGCAAAAGAGGAAAAGAAGAAGGAAGGGGAAAAGAAGGCCGAGAAGAAAGAGGAACCCAAAAAGGTTAGGGACAATAAGACAGGTCCAAATGATGCAGTGGCTGAGCTAATCAAGGCCTACGGTGCATACAACCCATCAATGAGTACGCATTATTATGTGAGAAGTGTGGAGGAGGATCCCAATGCCTGTGTCATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

135

Amino Acids

15.05

Weight (kDa)

9.02

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	9 - 58	9.8e-10	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	3 cut(s)	137, 377, 390
AfaI	GTAC	2 cut(s)	30, 352
AhdI	GACNNNNNGTC	1 cut(s)	40
AluBI	AGCT	3 cut(s)	121, 175, 313
AluI	AGCT	3 cut(s)	121, 175, 313
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	3 cut(s)	137, 377, 390
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	243, 321
AspS9I	GGNCC	3 cut(s)	42, 203, 290
AsuHPI	GGTGA	2 cut(s)	139, 169
AvaII	GGWCC	3 cut(s)	42, 203, 290
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	78
BccI	CCATC	2 cut(s)	94, 349
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	181
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	3 cut(s)	42, 203, 290
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	42, 203, 290
BmiI	GGNNCC	2 cut(s)	261, 384
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	141
Bpu1102I	GCTNAGC	1 cut(s)	309
Bse1I	ACTGG	2 cut(s)	136, 146
BseMII	CTCAG	3 cut(s)	84, 177, 300
BseNI	ACTGG	2 cut(s)	136, 146
BseRI	GAGGAG	1 cut(s)	392
BshFI	GGCC	2 cut(s)	245, 323
BslFI	GGGAC	2 cut(s)	149, 290
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	2 cut(s)	149, 290
BsnI	GGCC	2 cut(s)	245, 323
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	93, 142, 382
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	2 cut(s)	245, 323
BspCNI	CTCAG	3 cut(s)	83, 178, 301
BspLI	GGNNCC	2 cut(s)	261, 384
BspPI	GGATC	3 cut(s)	137, 377, 390
BsrI	ACTGG	2 cut(s)	136, 146
BssMI	GATC	3 cut(s)	93, 142, 382
Bst4CI	ACNGT	2 cut(s)	127, 329
BstDEI	CTNAG	3 cut(s)	70, 186, 309
BstKTI	GATC	3 cut(s)	96, 145, 385
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	93, 142, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 82, 329
BstX2I	RGATCY	2 cut(s)	142, 382
BstYI	RGATCY	2 cut(s)	142, 382
BsuRI	GGCC	2 cut(s)	245, 323
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	153, 183, 309
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	42, 203, 290
Csp6I	GTAC	2 cut(s)	29, 351
CviAII	CATG	2 cut(s)	58, 106
CviJI	RGCY	9 cut(s)	56, 76, 85, 121, 175, 245, 308, 313, 323
CviKI_1	RGCY	9 cut(s)	56, 76, 85, 121, 175, 245, 308, 313, 323
CviQI	GTAC	2 cut(s)	29, 351
DdeI	CTNAG	3 cut(s)	70, 186, 309
DpnI	GATC	3 cut(s)	95, 144, 384
DpnII	GATC	3 cut(s)	93, 142, 382
DriI	GACNNNNNGTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	3 cut(s)	42, 203, 290
EcoT38I	GRGCYC	1 cut(s)	78
FaeI	CATG	2 cut(s)	61, 109
FaiI	YATR	6 cut(s)	59, 107, 140, 178, 334, 363
FaqI	GGGAC	2 cut(s)	149, 290
FatI	CATG	2 cut(s)	57, 105
Fnu4HI	GCNGC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	245, 323
Hin1II	CATG	2 cut(s)	61, 109
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	2 cut(s)	139, 169
Hpy166II	GTNNAC	2 cut(s)	31, 151
Hpy188III	TCNNGA	1 cut(s)	97
Hpy8I	GTNNAC	2 cut(s)	31, 151
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	5 cut(s)	74, 103, 220, 224, 235
HpyCH4III	ACNGT	2 cut(s)	127, 329
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	302, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 82, 329
HpyF3I	CTNAG	3 cut(s)	70, 186, 309
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	61, 109
Kzo9I	GATC	3 cut(s)	93, 142, 382
LpnPI	CCDG	6 cut(s)	25, 57, 117, 159, 219, 273
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	95, 144, 384
MboI	GATC	3 cut(s)	93, 142, 382
MboII	GAAGA	4 cut(s)	16, 61, 235, 262
MflI	RGATCY	2 cut(s)	142, 382
MhlI	GDGCHC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	54, 162, 208, 250, 370, 373
MslI	CAYNNNNRTG	1 cut(s)	360
MwoI	GCNNNNNNNGC	3 cut(s)	62, 82, 329
NdeII	GATC	3 cut(s)	93, 142, 382
NlaIII	CATG	2 cut(s)	61, 109
NlaIV	GGNNCC	2 cut(s)	261, 384
NmeAIII	GCCGAG	1 cut(s)	271
NmuCI	GTSAC	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	261, 384
PspPI	GGNCC	3 cut(s)	42, 203, 290
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	142, 382
RsaI	GTAC	2 cut(s)	30, 352
RsaNI	GTAC	2 cut(s)	29, 351
RseI	CAYNNNNRTG	1 cut(s)	360
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	93, 142, 382
Sau96I	GGNCC	3 cut(s)	42, 203, 290
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	7 cut(s)	30, 44, 123, 177, 273, 292, 315
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	3 cut(s)	42, 203, 290
SmiMI	CAYNNNNRTG	1 cut(s)	360
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	181
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	127, 329
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	3 cut(s)	78, 92, 98
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	3 cut(s)	153, 190, 309
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	17, 122
TspRI	CASTG	3 cut(s)	153, 190, 309
VpaK11BI	GGWCC	3 cut(s)	42, 203, 290
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.