Rh1AG430300

FK506-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000998
Physical Location & Seq
Forward (+)
65709711 .. 65710591
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG430300.1

Sequence Viewer

Length: 372 bp
ATGAAGAAAGTTGTGTTGTTGTTGGACGTACACGACGACAGGTCCAAGAAGAAAGCCATGAGGGCAGTCTCAGGGCTCGAAGGGCTAGATTCGATCTCGATGGACATGAAGGACAAGAAGCTCACGGTAACTGGGGAAATAGATCCAGTGAACTTGGTGAGCAAGTTGAGGAAGCTATGCCGCACTGAGATAGTGTCGGTAGGACCAGCAAAAGAGGAAAAGAAGAAGGAAGAGCCAAAGAAAGAGGAACCCAAAAAGGGTGGGGAGAAGAAGAAAGATCCAAAAGATGAAGTGGCATACAACCCACCAATGAGTACGTATTATTATGTGAGAAGTGTGGAGGAGGATCCCAATGCCTGTGTCATCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

8.86

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 9 - 58 3e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 181
AclWI GGATC 4 cut(s) 137, 272, 341, 354
AfaI GTAC 2 cut(s) 30, 316
AfiI CCNNNNNNNGG 1 cut(s) 257
AhdI GACNNNNNGTC 1 cut(s) 40
AluBI AGCT 2 cut(s) 121, 175
AluI AGCT 2 cut(s) 121, 175
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 4 cut(s) 137, 272, 341, 354
AspS9I GGNCC 2 cut(s) 42, 203
AsuHPI GGTGA 1 cut(s) 169
AvaII GGWCC 2 cut(s) 42, 203
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 78
BccI CCATC 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 86
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 42, 203
BmeRI GACNNNNNGTC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 42, 203
BmiI GGNNCC 2 cut(s) 249, 348
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
BsaAI YACGTR 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse1I ACTGG 2 cut(s) 136, 146
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 84, 177
BseNI ACTGG 2 cut(s) 136, 146
BseRI GAGGAG 1 cut(s) 356
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 4 cut(s) 93, 142, 277, 346
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 83, 178
BspLI GGNNCC 2 cut(s) 249, 348
BspPI GGATC 4 cut(s) 137, 272, 341, 354
BspQI GCTCTTC 1 cut(s) 225
BsrI ACTGG 2 cut(s) 136, 146
BssMI GATC 4 cut(s) 93, 142, 277, 346
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 70, 186
BstKTI GATC 4 cut(s) 96, 145, 280, 349
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 4 cut(s) 93, 142, 277, 346
BstMWI GCNNNNNNNGC 2 cut(s) 62, 82
BstSNI TACGTA 1 cut(s) 318
BstX2I RGATCY 3 cut(s) 142, 277, 346
BstYI RGATCY 3 cut(s) 142, 277, 346
BtsIMutI CAGTG 2 cut(s) 153, 183
Cfr13I GGNCC 2 cut(s) 42, 203
Csp6I GTAC 2 cut(s) 29, 315
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 2 cut(s) 58, 106
CviJI RGCY 6 cut(s) 56, 76, 85, 121, 175, 235
CviKI_1 RGCY 6 cut(s) 56, 76, 85, 121, 175, 235
CviQI GTAC 2 cut(s) 29, 315
DdeI CTNAG 2 cut(s) 70, 186
DpnI GATC 4 cut(s) 95, 144, 279, 348
DpnII GATC 4 cut(s) 93, 142, 277, 346
DriI GACNNNNNGTC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 225
Eco105I TACGTA 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 42, 203
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 2 cut(s) 61, 109
FaiI YATR 5 cut(s) 59, 107, 178, 298, 327
FatI CATG 2 cut(s) 57, 105
Fnu4HI GCNGC 1 cut(s) 181
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 181
Hin1II CATG 2 cut(s) 61, 109
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 31, 151
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 31, 151
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 74, 103, 220
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 2 cut(s) 27, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 82
HpyF3I CTNAG 2 cut(s) 70, 186
HpySE526I ACGT 2 cut(s) 27, 317
Hsp92II CATG 2 cut(s) 61, 109
Kzo9I GATC 4 cut(s) 93, 142, 277, 346
LguI GCTCTTC 1 cut(s) 225
LpnPI CCDG 5 cut(s) 25, 57, 117, 159, 219
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 27, 317
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 95, 144, 279, 348
MboI GATC 4 cut(s) 93, 142, 277, 346
MboII GAAGA 6 cut(s) 16, 61, 235, 242, 280, 283
MflI RGATCY 3 cut(s) 142, 277, 346
MhlI GDGCHC 1 cut(s) 78
MnlI CCTC 6 cut(s) 54, 162, 208, 238, 334, 337
MwoI GCNNNNNNNGC 2 cut(s) 62, 82
NdeII GATC 4 cut(s) 93, 142, 277, 346
NlaIII CATG 2 cut(s) 61, 109
NlaIV GGNNCC 2 cut(s) 249, 348
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 182
Ppu21I YACGTR 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 249, 348
PspPI GGNCC 2 cut(s) 42, 203
PsuI RGATCY 3 cut(s) 142, 277, 346
RsaI GTAC 2 cut(s) 30, 316
RsaNI GTAC 2 cut(s) 29, 315
SapI GCTCTTC 1 cut(s) 225
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 4 cut(s) 93, 142, 277, 346
Sau96I GGNCC 2 cut(s) 42, 203
SduI GDGCHC 1 cut(s) 78
SetI ASST 5 cut(s) 30, 44, 123, 177, 320
SinI GGWCC 2 cut(s) 42, 203
SnaBI TACGTA 1 cut(s) 318
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 2 cut(s) 30, 320
TaqI TCGA 3 cut(s) 78, 92, 98
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 89
TscAI CASTG 2 cut(s) 153, 190
TspDTI ATGAA 3 cut(s) 17, 122, 303
TspRI CASTG 2 cut(s) 153, 190
VpaK11BI GGWCC 2 cut(s) 42, 203
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.