Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

63422381 .. 63424301

Gene Structure 1921 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG419200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGGACAGTCTCAGGGCTCGAAGGGCTAGATTCGATCTCGATGGACATGAAGGACAAGAAGCTCACGGTGACTGGGGAAATAGATCCAGTGAACTTGGTGAGCAAGTTGAGGAAGCTATGCCGCACTGAGATAGTGTCGGTAGGACCAGCAAAAGAGGAAAAGAAGAAGGAAGAGCCAAAGAAAGAGGAACCCAAAAAGGGTGGGGATCAGAAGAAGAAAGATCCAAAAGATGAATTGGCTGAGCTAATCAAGGCCTACAATGCATACAACCCACCAATGAGTACGCATTATTATGTGAGAAGTGTGGAGGAGGATCCCAATGCCTGTGTCATCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

7.64

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	2 - 39	5.6e-06	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	5 cut(s)	80, 216, 218, 311, 324
AfaI	GTAC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	200
AluBI	AGCT	3 cut(s)	64, 118, 247
AluI	AGCT	3 cut(s)	64, 118, 247
Alw26I	GTCTC	1 cut(s)	16
AlwI	GGATC	5 cut(s)	80, 216, 218, 311, 324
AoxI	GGCC	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	82, 112
AvaII	GGWCC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	21
BccI	CCATC	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	16
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	1 cut(s)	124
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	192, 318
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	79, 89
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	27, 120, 234
BseNI	ACTGG	2 cut(s)	79, 89
BseRI	GAGGAG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	36, 85, 208, 223, 316
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	3 cut(s)	26, 121, 235
BspLI	GGNNCC	2 cut(s)	192, 318
BspPI	GGATC	5 cut(s)	80, 216, 218, 311, 324
BspQI	GCTCTTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	79, 89
BssMI	GATC	5 cut(s)	36, 85, 208, 223, 316
Bst4CI	ACNGT	2 cut(s)	10, 70
Bst6I	CTCTTC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	13, 129, 243
BstKTI	GATC	5 cut(s)	39, 88, 211, 226, 319
BstMAI	GTCTC	1 cut(s)	16
BstMBI	GATC	5 cut(s)	36, 85, 208, 223, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 263
BstX2I	RGATCY	3 cut(s)	85, 223, 316
BstYI	RGATCY	3 cut(s)	85, 223, 316
BsuRI	GGCC	1 cut(s)	257
BtsIMutI	CAGTG	2 cut(s)	96, 126
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	285
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	8 cut(s)	19, 28, 64, 118, 178, 242, 247, 257
CviKI_1	RGCY	8 cut(s)	19, 28, 64, 118, 178, 242, 247, 257
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	13, 129, 243
DpnI	GATC	5 cut(s)	38, 87, 210, 225, 318
DpnII	GATC	5 cut(s)	36, 85, 208, 223, 316
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 121, 268, 297
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	124
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	257
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	2 cut(s)	82, 112
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	17, 46, 163
HpyCH4III	ACNGT	2 cut(s)	10, 70
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 263
HpyF3I	CTNAG	3 cut(s)	13, 129, 243
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	5 cut(s)	36, 85, 208, 223, 316
LguI	GCTCTTC	1 cut(s)	168
LpnPI	CCDG	3 cut(s)	60, 102, 162
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	5 cut(s)	38, 87, 210, 225, 318
MboI	GATC	5 cut(s)	36, 85, 208, 223, 316
MboII	GAAGA	4 cut(s)	178, 185, 226, 229
MflI	RGATCY	3 cut(s)	85, 223, 316
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	236
MnlI	CCTC	5 cut(s)	105, 151, 181, 304, 307
Mph1103I	ATGCAT	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	25, 263
NdeII	GATC	5 cut(s)	36, 85, 208, 223, 316
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	2 cut(s)	192, 318
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	125
PspN4I	GGNNCC	2 cut(s)	192, 318
PspPI	GGNCC	1 cut(s)	146
PsuI	RGATCY	3 cut(s)	85, 223, 316
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	168
SatI	GCNGC	1 cut(s)	124
Sau3AI	GATC	5 cut(s)	36, 85, 208, 223, 316
Sau96I	GGNCC	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	66, 120, 249
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	236
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	29
StuI	AGGCCT	1 cut(s)	257
TaaI	ACNGT	2 cut(s)	10, 70
TaqI	TCGA	3 cut(s)	21, 35, 41
TasI	AATT	1 cut(s)	236
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	2 cut(s)	96, 133
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	65, 249
TspRI	CASTG	2 cut(s)	96, 133
VpaK11BI	GGWCC	1 cut(s)	146
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.