pycom06g08610

late blight resistance protein homolog R1B-19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000998
Physical Location & Seq
Forward (+)
13852896 .. 13853195
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08610.1

Sequence Viewer

Length: 300 bp
ATGAAGGAGAGGAAACTAACAGTGATCGGCGACGTTGACCCGGTGGATGTCGTGGCCAAACTGAGAAAAGGGTGGTACACAGACATTCTAACAGTTGGGCCAGCAAAGGAAGAAAAGAAGGATGATAAGAAAGATGGAGGGGCTGCCAAAAAAGATGAAGGCAAGAAAGAAGATGATAAGAAGAAGGCTGATCCAGTTGCTGAACTTGTCAAAGCCTACCAAGCATACAATCCTCACATGACCAAGTACTACTATGTCCAAAGTGCTGAAGAAAACCCTAATTCCTGCGTTATCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

100

Amino Acids

11.14

Weight (kDa)

7.67

Isoelectric Point (pI)

27.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 2 cut(s) 77, 248
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 200
AoxI GGCC 2 cut(s) 54, 98
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 41
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 128
BcnI CCSGG 1 cut(s) 41
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 41
BpuMI CCSGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 194
BseGI GGATG 2 cut(s) 52, 127
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 2 cut(s) 56, 100
BsiSI CCGG 1 cut(s) 41
BsnI GGCC 2 cut(s) 56, 100
Bsp143I GATC 2 cut(s) 24, 190
BspANI GGCC 2 cut(s) 56, 100
BspCNI CTCAG 1 cut(s) 54
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 194
BssMI GATC 2 cut(s) 24, 190
Bst4CI ACNGT 2 cut(s) 22, 94
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 52, 127
BstKTI GATC 2 cut(s) 27, 193
BstMBI GATC 2 cut(s) 24, 190
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 56, 100
BtsCI GGATG 2 cut(s) 52, 127
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 76, 247
CviAII CATG 1 cut(s) 238
CviJI RGCY 5 cut(s) 56, 100, 143, 188, 215
CviKI_1 RGCY 5 cut(s) 56, 100, 143, 188, 215
CviQI GTAC 2 cut(s) 76, 247
DdeI CTNAG 1 cut(s) 62
DpnI GATC 2 cut(s) 26, 192
DpnII GATC 2 cut(s) 24, 190
EaeI YGGCCR 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 288
FaeI CATG 1 cut(s) 241
FaiI YATR 3 cut(s) 226, 239, 255
FatI CATG 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 2 cut(s) 59, 134
Fsp4HI GCNGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 56, 100
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 241
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HpaII CCGG 1 cut(s) 41
Hpy166II GTNNAC 2 cut(s) 37, 78
Hpy8I GTNNAC 2 cut(s) 37, 78
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 3 cut(s) 112, 152, 178
HpyCH4III ACNGT 2 cut(s) 22, 94
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 1 cut(s) 62
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 1 cut(s) 241
Kzo9I GATC 2 cut(s) 24, 190
LpnPI CCDG 3 cut(s) 54, 114, 207
Lsp1109I GCAGC 1 cut(s) 130
MaeII ACGT 1 cut(s) 33
MalI GATC 2 cut(s) 26, 192
MboI GATC 2 cut(s) 24, 190
MboII GAAGA 4 cut(s) 122, 182, 193, 281
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 1 cut(s) 280
MluNI TGGCCA 1 cut(s) 56
MnlI CCTC 3 cut(s) 3, 131, 243
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 1 cut(s) 298
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 41
NdeII GATC 2 cut(s) 24, 190
NlaIII CATG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 200
RsaI GTAC 2 cut(s) 77, 248
RsaNI GTAC 2 cut(s) 76, 247
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 24, 190
Sau96I GGNCC 1 cut(s) 98
ScaI AGTACT 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 41
SetI ASST 1 cut(s) 36
Sse9I AATT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 22, 94
TaiI ACGT 1 cut(s) 36
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 2 cut(s) 17, 171
TspRI CASTG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.