Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000998

Physical Location & Seq

Genomic Coordinates Forward (+)

30332346 .. 30333497

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1209000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGAAAGTAGTGTTGAAATTGGAATTATACGACGAGAAGTGTAAGAAGAAAGTCATGAGGGCCGTCTCGGGGCTTGAAGGCCTTGATTCAATTTCTATGGATATGAAGGACAAGAAGTTGACGGCCACAGGGGACATAGATCCCGTGCATTTGGTGGGAAGATTGAGGAAGCTTTGCCGGACGGAGATAGTCTCAGTCGGACCGGCAAAGGAGGAGAAGAAGAAAGAGGAGCCGAAGAAGGAGGAGCCGAAGAAGAAAGATCCAAAGGACGAAATGCTTGAGCTTATGAAGGCCTACCCAGCACTTTATCCTCCAATGCCTGCGTATTATTACGTAAGAAGTTCAGAAGAGGATCCCAATGCTTGTGTCATTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

8.77

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	10 - 58	3.1e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01490 AT1G01490 AT1G01490 AT1G01490
fragaria_vesca	FvH4_5g03140 FvH4_7g15300 FvH4_7g30310
malus_domestica	MD01G1070300.v1.1 MD01G1209000.v1.1 MD01G1209100.v1.1 MD01G1209200.v1.1 MD06G1090200.v1.1 MD07G1131800.v1.1 MD07G1279400.v1.1 MD14G1111400.v1.1
prunus_persica	Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G176600_v2.0.a1 Prupe.2G301600_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1 Prupe.5G106100_v2.0.a1
pyrus_communis	pycom01g09950 pycom01g21960 pycom06g08610 pycom07g12900 pycom14g10620
rosa_chinensis	RchiOBHm_Chr1g0357621 RchiOBHm_Chr1g0378461 RchiOBHm_Chr7g0196641
rosa_laevigata	RLG00000004001 RLG00000026435 RLG00000028013
rosa_multiflora	Rmu_sc0003562.1_g000002 Rmu_sc0003562.1_g000004 Rmu_sc0004683.1_g000007 Rmu_sc0006080.1_g000011 Rmu_sc0008712.1_g000015
rosa_roxburghii	Rroxscaffold_3G00259140 Rroxscaffold_4G00280450 Rroxscaffold_4G00298690
rosa_rugosa	Rorug01G0257300 Rorug01G0408900 Rorug01G0409000 Rorug07G0035700
rosa_samantha	Rh1AG271200 Rh1AG430300 Rh1BG238000 Rh1BG388200 Rh1CG255000 Rh1CG401600 Rh1DG266100 Rh1DG419200 Rh7AG159300 Rh7BG161300 Rh7CG167700 Rh7DG160600
rosa_wichuraiana	Rw1G024170 Rw1G037670 Rw1G037690 Rw7G013940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	137, 257, 350, 363
AcoI	YGGCCR	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	19, 80, 93
AluBI	AGCT	2 cut(s)	175, 286
AluI	AGCT	2 cut(s)	175, 286
Alw26I	GTCTC	2 cut(s)	73, 199
AlwI	GGATC	4 cut(s)	137, 257, 350, 363
Ama87I	CYCGRG	1 cut(s)	70
AoxI	GGCC	4 cut(s)	63, 82, 126, 294
AspS9I	GGNCC	2 cut(s)	63, 203
AvaI	CYCGRG	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	355
BceAI	ACGGC	2 cut(s)	50, 141
BcoDI	GTCTC	2 cut(s)	73, 199
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	63, 203
BmiI	GGNNCC	3 cut(s)	234, 249, 357
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpuEI	CTTGAG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	3 cut(s)	230, 245, 260
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	4 cut(s)	65, 84, 128, 296
BsiHKCI	CYCGRG	1 cut(s)	70
BsiSI	CCGG	2 cut(s)	181, 206
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	73, 199
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	4 cut(s)	65, 84, 128, 296
BsoBI	CYCGRG	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	142, 262, 355
BspANI	GGCC	4 cut(s)	65, 84, 128, 296
BspCNI	CTCAG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	57
BspLI	GGNNCC	3 cut(s)	234, 249, 357
BspPI	GGATC	4 cut(s)	137, 257, 350, 363
BsrFI	RCCGGY	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	205
BssMI	GATC	3 cut(s)	142, 262, 355
Bst6I	CTCTTC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	196
BstKTI	GATC	3 cut(s)	145, 265, 358
BstMAI	GTCTC	2 cut(s)	73, 199
BstMBI	GATC	3 cut(s)	142, 262, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstSNI	TACGTA	1 cut(s)	337
BstX2I	RGATCY	3 cut(s)	142, 262, 355
BstYI	RGATCY	3 cut(s)	142, 262, 355
BsuRI	GGCC	4 cut(s)	65, 84, 128, 296
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	63, 203
CpoI	CGGWCCG	1 cut(s)	203
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	9 cut(s)	65, 76, 84, 128, 175, 235, 250, 286, 296
CviKI_1	RGCY	9 cut(s)	65, 76, 84, 128, 175, 235, 250, 286, 296
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	3 cut(s)	144, 264, 357
DpnII	GATC	3 cut(s)	142, 262, 355
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	337
Eco147I	AGGCCT	2 cut(s)	84, 296
Eco47I	GGWCC	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	70
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	61
FaiI	YATR	6 cut(s)	31, 59, 101, 107, 140, 290
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	65, 84, 128, 296
HapII	CCGG	2 cut(s)	181, 206
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	181, 206
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	203, 349
Hpy188III	TCNNGA	1 cut(s)	58
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	74, 103, 235, 286
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	142, 262, 355
LmnI	GCTCC	2 cut(s)	232, 247
LpnPI	CCDG	5 cut(s)	117, 194, 219, 315, 336
MaeII	ACGT	1 cut(s)	336
MalI	GATC	3 cut(s)	144, 264, 357
MboI	GATC	3 cut(s)	142, 262, 355
MboII	GAAGA	9 cut(s)	16, 61, 174, 232, 235, 250, 265, 268, 362
MflI	RGATCY	3 cut(s)	142, 262, 355
MluCI	AATT	3 cut(s)	20, 26, 93
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	7 cut(s)	54, 162, 208, 223, 238, 324, 346
MspI	CCGG	2 cut(s)	181, 206
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	3 cut(s)	142, 262, 355
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	234, 249, 357
PagI	TCATGA	1 cut(s)	57
PceI	AGGCCT	2 cut(s)	84, 296
PfeI	GAWTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	234, 249, 357
PspPI	GGNCC	2 cut(s)	63, 203
PsuI	RGATCY	3 cut(s)	142, 262, 355
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	142, 262, 355
Sau96I	GGNCC	2 cut(s)	63, 203
SetI	ASST	3 cut(s)	177, 288, 339
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SnaBI	TACGTA	1 cut(s)	337
Sse9I	AATT	3 cut(s)	20, 26, 93
SseBI	AGGCCT	2 cut(s)	84, 296
StuI	AGGCCT	2 cut(s)	84, 296
TaiI	ACGT	1 cut(s)	339
TasI	AATT	3 cut(s)	20, 26, 93
TfiI	GAWTC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	17, 122, 305
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.