Rh1AG271200

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
49952013 .. 49954845
2833 bp
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UTR
Exon/CDS
Intron
Rh1AG271200.1

Sequence Viewer

Length: 441 bp
ATGGACATGAAGGAGAAGAAACTAACAGTGATCGGGTCGGTGGATCCAGTGAATGTGGTGAGCAAATTGCGCAAGTATTGGCCAACAGATATGATCTCAGTAGGGCCAGCAGTAGAGCCTAAGAAAGAGGAGCCAAAGAAGGAAGAAGCAAAGAAAGAAGAAGGAAAGAAGGAAGGAGAGGAAGCGAAGAAAGAAGGGGAAGAGGCGAAGAAGGAGGAACCCAAGAAAGAGGAGGAGAAGAAAGAAGGAGGAGGAGAGGAAGCTAAGAAAGAAGAGCCAAAGAAGGAGGAAAAGAAAGAAGAAGAGAAGAAGAAAGACGTTCCTCCTCCAGACCCCGTCTTAGAGCTTGTCAAGGCTTACAGAGCATACAACCCTCACATGACCACTTATTACCATGTGCAAAGCATTGAAGAGAATCCAAATGCTTGTGTTATTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.74

Weight (kDa)

5.54

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 71
AclWI GGATC 2 cut(s) 38, 51
AcoI YGGCCR 1 cut(s) 80
AgsI TTSAA 1 cut(s) 410
AluBI AGCT 2 cut(s) 263, 346
AluI AGCT 2 cut(s) 263, 346
AlwI GGATC 2 cut(s) 38, 51
AoxI GGCC 2 cut(s) 80, 104
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 70
BalI TGGCCA 1 cut(s) 82
BamHI GGATCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 104
BmiI GGNNCC 3 cut(s) 45, 132, 219
BpmI CTGGAG 1 cut(s) 312
Bse1I ACTGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 6 cut(s) 143, 245, 248, 264, 267, 315
BshFI GGCC 2 cut(s) 82, 106
BsnI GGCC 2 cut(s) 82, 106
Bsp143I GATC 3 cut(s) 30, 43, 93
BspANI GGCC 2 cut(s) 82, 106
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 45, 132, 219
BspPI GGATC 2 cut(s) 38, 51
BspQI GCTCTTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 47
BssMI GATC 3 cut(s) 30, 43, 93
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 4 cut(s) 195, 267, 297, 405
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 97, 120, 264, 340
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 33, 46, 96
BstMBI GATC 3 cut(s) 30, 43, 93
BstMWI GCNNNNNNNGC 2 cut(s) 69, 362
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 2 cut(s) 82, 106
BtsIMutI CAGTG 2 cut(s) 33, 54
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 3 cut(s) 7, 379, 395
CviJI RGCY 8 cut(s) 82, 106, 118, 133, 263, 277, 346, 356
CviKI_1 RGCY 8 cut(s) 82, 106, 118, 133, 263, 277, 346, 356
DdeI CTNAG 4 cut(s) 97, 120, 264, 340
DpnI GATC 3 cut(s) 32, 45, 95
DpnII GATC 3 cut(s) 30, 43, 93
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 4 cut(s) 195, 267, 297, 405
EarI CTCTTC 4 cut(s) 195, 267, 297, 405
FaeI CATG 3 cut(s) 10, 382, 398
FaiI YATR 5 cut(s) 8, 92, 367, 380, 396
FatI CATG 3 cut(s) 6, 378, 394
FspI TGCGCA 1 cut(s) 71
GlaI GCGC 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 2 cut(s) 82, 106
HhaI GCGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 10, 382, 398
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 1 cut(s) 415
HphI GGTGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 329
HpyAV CCTTC 9 cut(s) 4, 133, 155, 163, 167, 188, 205, 239, 277
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 362
HpyF3I CTNAG 4 cut(s) 97, 120, 264, 340
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 3 cut(s) 10, 382, 398
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 30, 43, 93
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 60, 120, 342
MaeII ACGT 1 cut(s) 318
MalI GATC 3 cut(s) 32, 45, 95
MboI GATC 3 cut(s) 30, 43, 93
MflI RGATCY 1 cut(s) 43
MlsI TGGCCA 1 cut(s) 82
MluCI AATT 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 82
Mox20I TGGCCA 1 cut(s) 82
MscI TGGCCA 1 cut(s) 82
Msp20I TGGCCA 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 69, 362
NdeII GATC 3 cut(s) 30, 43, 93
NlaIII CATG 3 cut(s) 10, 382, 398
NlaIV GGNNCC 3 cut(s) 45, 132, 219
NsbI TGCGCA 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 415
PflFI GACNNNGTC 1 cut(s) 335
PspN4I GGNNCC 3 cut(s) 45, 132, 219
PspPI GGNCC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 30, 43, 93
Sau96I GGNCC 1 cut(s) 104
SetI ASST 3 cut(s) 265, 321, 348
Sse9I AATT 1 cut(s) 65
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 321
TasI AATT 1 cut(s) 65
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 2 cut(s) 33, 54
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 33, 54
Tth111I GACNNNGTC 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.